From: Diane Trout <diane@caltech.edu>
Date: Fri, 6 Jun 2008 21:02:36 +0000 (+0000)
Subject: don't use os.path.normpath when pathname is null in PipelineRun
X-Git-Tag: stanford.caltech-merged-database-2009-jan-15~53
X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=htsworkflow.git;a=commitdiff_plain;h=ab100363c60246e418189a2a953d4c380e249717

don't use os.path.normpath when pathname is null in PipelineRun
---

diff --git a/gaworkflow/pipeline/runfolder.py b/gaworkflow/pipeline/runfolder.py
index 25d9331..3758679 100644
--- a/gaworkflow/pipeline/runfolder.py
+++ b/gaworkflow/pipeline/runfolder.py
@@ -34,7 +34,10 @@ class PipelineRun(object):
     FLOWCELL_ID = 'FlowcellID'
 
     def __init__(self, pathname=None, firecrest=None, bustard=None, gerald=None, xml=None):
-        self.pathname = os.path.normpath(pathname)
+        if pathname is not None:
+          self.pathname = os.path.normpath(pathname)
+        else:
+          self.pathname = None
         self._name = None
         self._flowcell_id = None
         self.firecrest = firecrest