From: Diane Trout <diane@caltech.edu>
Date: Wed, 7 Mar 2012 00:05:42 +0000 (-0800)
Subject: Update help message since we have a new type of file to archive
X-Git-Tag: v0.5.5~54
X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=htsworkflow.git;a=commitdiff_plain;h=ac39c1bd0725636d3aed28de084397cec4ce00df

Update help message since we have a new type of file to archive
---

diff --git a/scripts/htsw-runfolder b/scripts/htsw-runfolder
index 53bceef..d4310b5 100755
--- a/scripts/htsw-runfolder
+++ b/scripts/htsw-runfolder
@@ -176,7 +176,7 @@ def make_parser():
     parser.add_option('--raw-format', dest="raw_format", default='qseq',
                       choices=['qseq', 'srf'],
                       help='Specify which type of raw format to use. '
-                           'Currently supported options: qseq, srf')
+                           'Currently supported options: qseq, srf, fastq')
     parser.add_option('-u', '--use-run', dest='use_run', default=None,
                       help='Specify which run to use instead of autoscanning '
                            'the runfolder. You do this by providing the final '