From: Diane Trout <diane@caltech.edu>
Date: Tue, 17 Feb 2009 22:45:51 +0000 (+0000)
Subject: remove cruft from an unimplemented feature
X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=htsworkflow.git;a=commitdiff_plain;h=b33d8e0795894ba64e2ef7784172abce7b452128

remove cruft from an unimplemented feature
---

diff --git a/htsworkflow/pipelines/configure_run.py b/htsworkflow/pipelines/configure_run.py
index 2174de1..4d5cf86 100644
--- a/htsworkflow/pipelines/configure_run.py
+++ b/htsworkflow/pipelines/configure_run.py
@@ -351,8 +351,7 @@ def pipeline_stderr_handler(line, conf_info):
   return False
 
 
-def retrieve_config(conf_info, flowcell, cfg_filepath, genome_dir, 
-                    cfg_defaults=None):
+def retrieve_config(conf_info, flowcell, cfg_filepath, genome_dir):
   """
   Gets the config file from server...
   requires config file in:
@@ -366,7 +365,7 @@ def retrieve_config(conf_info, flowcell, cfg_filepath, genome_dir,
 
   return True if successful, False is failure
   """
-  options = getCombinedOptions(cfg_defaults)
+  options = getCombinedOptions()
 
   if options.url is None:
     logging.error("%s or %s missing base_host_url option" % \