From: Diane Trout <diane@ghic.org>
Date: Mon, 21 Oct 2013 21:53:56 +0000 (-0700)
Subject: Merge remote-tracking branch 'brisby/django1.4' into django1.4
X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=htsworkflow.git;a=commitdiff_plain;h=b352bcebfc6c74f84d65a05c8cdbfb55d94d029c;hp=ca137094e039c414d3d110f48f169a4afe51f2f1

Merge remote-tracking branch 'brisby/django1.4' into django1.4
---

diff --git a/htsworkflow/pipelines/genomemap.py b/htsworkflow/pipelines/genomemap.py
index 1dd95df..6dfcf68 100644
--- a/htsworkflow/pipelines/genomemap.py
+++ b/htsworkflow/pipelines/genomemap.py
@@ -77,13 +77,15 @@ def guess_genome(contig_sizes):
     # guess genome names
 
     genomes = {'chr1': {197195432: 'mm9',
-                        247249719: 'hg19',
+                        247249719: 'hg18',
                         200994015: 'galGal3',
+                        230208: 'saccer1',
                         },
                'chrI': {230218: 'sacCer3',
                         15072421: 'elegans190'},
                '1': {60348388: 'danRe6'},
-               'chr2L': { 23011544: 'dm3' },
+               'chr2L': { 23011544: 'dm3',
+                          49364326: 'Anopheles_gambiae'},
 
                }