From: Unknown Author <unknown>
Date: Tue, 12 Aug 2008 23:28:29 +0000 (+0000)
Subject: this got here by mistake
X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=htsworkflow.git;a=commitdiff_plain;h=ca5699a32dbbde1672b407806ecf3cba97d126bc

this got here by mistake
---

diff --git a/gaworkflow/frontend/exp_track/main.py b/gaworkflow/frontend/exp_track/main.py
deleted file mode 100644
index bc79479..0000000
--- a/gaworkflow/frontend/exp_track/main.py
+++ /dev/null
@@ -1,92 +0,0 @@
-# some core functions of analysis manager module
-from django.http import HttpResponse
-from datetime import datetime
-from string import *
-import re
-from gaworkflow.frontend import settings
-from gaworkflow.frontend.analys_track.models import Task, Project
-from django.core.exceptions import ObjectDoesNotExist
-
-def updStatus(request):
-    ClIP = request.META['REMOTE_ADDR']
-    #Check client access permission                                                                                                                                       
-    granted = False
-    if (settings.ALLOWED_ANALYS_IPS.has_key(ClIP)):  granted = True
-    if not granted: return HttpResponse("access denied.")
-
-    output=''
-    taskid=-1;
-    # Check required param
-    if request.has_key('taskid'): taskid = request['taskid']
-    else:  return HttpResponse('missing param task id')
-
-    try:
-      rec = Task.objects.get(id=taskid)
-      mytimestamp = datetime.now().__str__()
-      mytimestamp = re.sub(pattern=":[^:]*$",repl="",string=mytimestamp)
-      if request.has_key('msg'):
-        rec.task_status += ", "+request['msg']+" ("+mytimestamp+")"
-      else :
-        rec.task_status = "Registered ("+mytimestamp+")"
-       rec.save()
-      output = "Hello "+ALLOWED_ANALYS_IPS[ClIP]+". Updated status for task "+taskid
-    except ObjectDoesNotExist:
-      output = "entry not found: taskid="
-
-    return HttpResponse(output)
-    
-      
-def getProjects(request):
-    ClIP = request.META['REMOTE_ADDR']
-    #Check client access permission 
-    granted = False
-    if (settings.ALLOWED_ANALYS_IPS.has_key(ClIP)):  granted = True
-    if not granted: return HttpResponse("access denied.")
-
-    outputfile = ''
-    
-    All=False
-    if (request.has_key('mode')):
-      if request['mode']=='all':
-        All=True
-
-    try:                                                                                   
-      if(All):
-        rec = Project.objects.all().distinct()
-      else:
-        rec = Project.objects.filter(tasks__task_status__exact='defined').distinct()
-
-      outputfile = '<?xml version="1.0" ?>'
-      outputfile += '\n<Projects Client="'+ALLOWED_ANALYS_IPS[ClIP]+'">'
-      for p in rec:
-        outputfile += '\n'
-        outputfile += '\n<Project ProjectId="'+p.project_id+'" Name="'+p.project_name+'">'
-        prj_tasks = p.tasks.all()
-        for t in prj_tasks:
-          outputfile += '\n'
-          if (t.apply_calc == 'QuEST' or t.apply_calc == 'WingPeaks'  or t.apply_calc == 'MACS'):
-            outputfile += '\n<PeakCalling TaskId="'+t.id.__str__()+'" Name="'+t.task_name+'" Caller="'+t.apply_calc+'" Genome="'+t.subject1.library_species.use_genome_build+'">'
-            outputfile += '\n<Signal Library="'+t.subject1.library_id+'"/>'
-            outputfile += '\n<Background Library="'+t.subject2.library_id+'"/>'
-            outputfile += '\n</PeakCalling>'
-
-          if (t.apply_calc == 'ProfileReads' or t.apply_calc == 'qPCR'):
-            outputfile += '\n<'+t.apply_calc+' TaskId="'+t.id.__str__()+'" Name="'+t.task_name+'" Genome="'+t.subject1.library_species.use_genome_build+'" Library="'+t.subject1.library_id+'"/>'
-            
-          if (t.apply_calc == 'CompareLibs'):
-            outputfile += '\n<CompareLibraries TaskId="'+t.id.__str__()+'" TF="'+t.task_name+'" Genome="'+t.subject1.library_species.use_genome_build+'">'
-            outputfile += '\n<Library Library="'+t.subject1.library_id+'"/>'
-            outputfile += '\n<Library Library="'+t.subject2.library_id+'"/>'
-            outputfile += '\n</CompareLibraries>'
-
-          #if (t.apply_calc == 'ComparePeakCalls'):
-          # <ComparePeakCalls Genome="hg18" Caller1="QuEST" Set1="A549 GR Dex ChIP" Caller2="QuEST" Set2="A549 GR EtOH ChIP" />
-          # outputfile += '\n<ComparePeakCalls TaskId='+t.id.__str__()+' Genome="'+t.subject1.library_species.use_genome_build+'" Caller1="'+t.pcaller1+'" Caller1="'+t.pcaller1+'" Caller2="'+t.pcaller2+'" Set1="'+t.set1+'" Set1="'+t.set2+'"/>'
-          # TO DO: Define these new fields in Task: PCaller1 (QuEST,WingPeaks), PCaller2, Set1(FK to self), Set2 (FK..) ALL NULL=TRUE  
-        
-        outputfile += '\n</Project>' 
-      outputfile += '\n</Projects>'
-    except ObjectDoesNotExist:
-      outputfile = "<?xml version='1.0' ?><Projects></Projects>"
-
-    return HttpResponse(outputfile)