From: Diane Trout <diane@caltech.edu>
Date: Tue, 1 Dec 2009 22:19:09 +0000 (+0000)
Subject: Fix typo in srf command
X-Git-Tag: 0.4.0~31
X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=htsworkflow.git;a=commitdiff_plain;h=cf84b54d691e01bb7624162d82ea4646020d7230

Fix typo in srf command
---

diff --git a/scripts/srf b/scripts/srf
index 5a06d5d..d363a4e 100644
--- a/scripts/srf
+++ b/scripts/srf
@@ -6,7 +6,7 @@ import os
 import sys
 
 from htsworkflow.pipelines import runfolder
-from htsworkflow.pipelines.srf import make_commands, run_srf_commands
+from htsworkflow.pipelines.srf import make_commands, run_srf_commands, pathname_to_run_name
 from htsworkflow.pipelines.srf import ILLUMINA2SRF10, ILLUMINA2SRF11, SOLEXA2SRF
 
 def make_parser():
@@ -106,7 +106,7 @@ def main(cmdline=None):
 
     if not opts.dry_run:
       for cwd, cmd_list in cmds.items():
-        run_srf_command(cwd, cmd_list, opts.jobs)
+        run_srf_commands(cwd, cmd_list, opts.jobs)
     else:
       for cwd, cmd_list in cmds.items():
         print cwd