From: Diane Trout <diane@caltech.edu>
Date: Sat, 30 Jun 2012 03:23:43 +0000 (-0700)
Subject: Disable debug messages for each scanned eland file pattern
X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=htsworkflow.git;a=commitdiff_plain;h=d3a619256049b473e5f65f99c160589e1879d7f0

Disable debug messages for each scanned eland file pattern
Given how many places I'm looking for the eland files the debug
messages were getting way too noisy.
---

diff --git a/htsworkflow/pipelines/eland.py b/htsworkflow/pipelines/eland.py
index e63eab6..0d8d753 100644
--- a/htsworkflow/pipelines/eland.py
+++ b/htsworkflow/pipelines/eland.py
@@ -673,14 +673,10 @@ class ELAND(object):
             self.results[end][lane_id] = lane
 
 def check_for_eland_file(basedir, pattern, lane_id, end):
-   #if end is None:
-   #   full_lane_id = lane_id
-   #else:
-   #   full_lane_id = "%d_%d" % ( lane_id, end )
    eland_files = []
    eland_pattern = pattern % (lane_id, end)
    eland_re = re.compile(eland_pattern)
-   LOGGER.debug("Eland pattern: %s" %(eland_pattern,))
+   #LOGGER.debug("Eland pattern: %s" %(eland_pattern,))
    for filename in os.listdir(basedir):
        if eland_re.match(filename):
            LOGGER.info('found eland file %s' % (filename,))