From: Diane Trout Date: Mon, 7 Feb 2011 23:51:05 +0000 (-0800) Subject: Add documentation about which Phred format we're generating X-Git-Tag: 0.5.1~8 X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=htsworkflow.git;a=commitdiff_plain;h=dd8f54ea1fe43b764a98b427a3e84e76a2ec6b37 Add documentation about which Phred format we're generating --- diff --git a/htsworkflow/pipelines/qseq2fastq.py b/htsworkflow/pipelines/qseq2fastq.py index 286663b..ac44c1e 100755 --- a/htsworkflow/pipelines/qseq2fastq.py +++ b/htsworkflow/pipelines/qseq2fastq.py @@ -43,7 +43,7 @@ def main(cmdline=None): def make_parser(): - usage = "%prog: [options] *_qseq.txt" + usage = "%prog: [options] *_qseq.txt\nProduces Phred33 files by default" parser = OptionParser(usage) parser.add_option("-a", "--fasta", default=False, action="store_true", help="produce fasta files instead of fastq files")