From: Diane Trout <diane@caltech.edu>
Date: Wed, 22 Jun 2011 22:04:04 +0000 (-0700)
Subject: allow running ucsc_gather --fastq without specifying an analysis name or model
X-Git-Tag: 0.5.2~13
X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=htsworkflow.git;a=commitdiff_plain;h=e39a73a02997e38a6dbf7797c5f657793e9c7059

allow running ucsc_gather --fastq without specifying an analysis name or model
---

diff --git a/extra/ucsc_encode_submission/ucsc_gather.py b/extra/ucsc_encode_submission/ucsc_gather.py
index 2b9ba85..6172df7 100755
--- a/extra/ucsc_encode_submission/ucsc_gather.py
+++ b/extra/ucsc_encode_submission/ucsc_gather.py
@@ -46,8 +46,10 @@ def main(cmdline=None):
     apidata = api.make_auth_from_opts(opts, parser)
 
     model = get_model(opts.load_model)
-    mapper = DAFMapper(opts.name, opts.daf,  model)
-    submission_uri = get_submission_uri(opts.name)
+    if opts.name:
+        mapper = DAFMapper(opts.name, opts.daf,  model)
+        submission_uri = get_submission_uri(opts.name)
+        
     if opts.load_rdf is not None:
         load_into_model(model, 'turtle', opts.load_rdf, submission_uri)