From: Diane Trout Date: Tue, 10 Mar 2009 01:17:13 +0000 (+0000) Subject: The public library page needed to pass eland.genome_map to summarize_mapped_reads X-Git-Tag: 0.2.0.2~16 X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=htsworkflow.git;a=commitdiff_plain;h=e6d4bc005800d076ed9f555bac0bd3d97bc31834 The public library page needed to pass eland.genome_map to summarize_mapped_reads --- diff --git a/htsworkflow/frontend/samples/views.py b/htsworkflow/frontend/samples/views.py index 58bef91..b6561a6 100644 --- a/htsworkflow/frontend/samples/views.py +++ b/htsworkflow/frontend/samples/views.py @@ -243,7 +243,7 @@ def _summary_stats(flowcell_id, lane_id): eland_summary.flowcell_id = flowcell_id eland_summary.clusters = gerald_summary[end][lane_id].cluster eland_summary.cycle_width = cycle_width - eland_summary.summarized_reads = runfolder.summarize_mapped_reads(eland_summary.mapped_reads) + eland_summary.summarized_reads = runfolder.summarize_mapped_reads(eland_summary.genome_map, eland_summary.mapped_reads) # grab some more information out of the flowcell db flowcell = FlowCell.objects.get(flowcell_id=fc_id)