From: Diane Trout <diane@ghic.org>
Date: Thu, 5 Dec 2013 23:28:36 +0000 (-0800)
Subject: Merge branch 'django1.4' of mus.cacr.caltech.edu:htsworkflow into django1.4
X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=htsworkflow.git;a=commitdiff_plain;h=f7abcc50636dc384cb23fff66e0e618f39b879a0;hp=86dc57e6227c79cd3f599e3d8bac46a44f961607

Merge branch 'django1.4' of mus.cacr.caltech.edu:htsworkflow into django1.4
---

diff --git a/htsworkflow/pipelines/genomemap.py b/htsworkflow/pipelines/genomemap.py
index 1dd95df..6dfcf68 100644
--- a/htsworkflow/pipelines/genomemap.py
+++ b/htsworkflow/pipelines/genomemap.py
@@ -77,13 +77,15 @@ def guess_genome(contig_sizes):
     # guess genome names
 
     genomes = {'chr1': {197195432: 'mm9',
-                        247249719: 'hg19',
+                        247249719: 'hg18',
                         200994015: 'galGal3',
+                        230208: 'saccer1',
                         },
                'chrI': {230218: 'sacCer3',
                         15072421: 'elegans190'},
                '1': {60348388: 'danRe6'},
-               'chr2L': { 23011544: 'dm3' },
+               'chr2L': { 23011544: 'dm3',
+                          49364326: 'Anopheles_gambiae'},
 
                }