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mark the example submission rule files as being raw, so the escapes dont get confused
[htsworkflow.git] / encode_submission /
2014-10-23 Diane TroutChange unittest2 back into unittest. tree | commitdiff
2014-06-10 Diane TroutDirectly generate compressed fastq files from HiSeq... tree | commitdiff
2013-12-17 Diane TroutMerge branch 'django1.4' tree | commitdiff
2013-10-21 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... tree | commitdiff
2013-10-17 Diane TroutMerge branch 'master' into django1.4 tree | commitdiff
2013-10-17 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... tree | commitdiff
2013-10-08 Diane TroutAdd helpful logging information to explain missing... tree | commitdiff
2013-07-22 Diane TroutGenerate manifest.txt files for submitting to ENCODE3. tree | commitdiff
2013-07-08 Diane TroutUpdate test to work with species -> species_name rename. tree | commitdiff
2013-07-03 Diane TroutGenerate manifest files for ENCODE3 tree | commitdiff
2013-07-01 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... tree | commitdiff
2013-07-01 Diane TroutAdd the option to copy tree in addition to making a... tree | commitdiff
2013-07-01 Diane TroutInitial attempt to start generating trackHubs and manif... tree | commitdiff
2013-06-28 Diane TroutAdd option to copy source files for a submission. tree | commitdiff
2013-02-01 Diane TroutPreliminary implementation of trackDb generation. tree | commitdiff
2012-11-29 Diane TroutRemove prints that were being called in test code. tree | commitdiff
2012-11-28 Diane TroutConvert to unittest2 tree | commitdiff
2012-11-28 Diane TroutConvert to unittest2 tree | commitdiff
2012-11-20 Diane TroutFix RDF schema problems with lane_number and species. tree | commitdiff
2012-11-14 Diane TroutAdd error message for typoing a result map filename. tree | commitdiff
2012-09-25 Diane TroutThis might actually generate soft file with raw & suppl... tree | commitdiff
2012-09-24 Diane TroutAdd a log message to for debugging tree | commitdiff
2012-09-19 Diane TroutUse htsworkflow ontology to validate various RDF using... tree | commitdiff
2012-09-18 Diane TroutMerge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor... tree | commitdiff
2012-09-18 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-09-18 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-09-15 Diane TroutStart implementing infering triples. tree | commitdiff
2012-09-12 Diane TroutAdd a helpful error message when we need the submission... tree | commitdiff
2012-09-10 Diane TroutUse the same model for building fastqs as for building... tree | commitdiff
2012-09-01 Diane TroutAutomatically add the flowcell subdirectory to the... tree | commitdiff
2012-08-06 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-08-01 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-07-27 Diane TroutFix issues introduced when switching to the django... tree | commitdiff
2012-06-22 Diane TroutAdd links to libraries and submission to data loaded... tree | commitdiff
2012-06-21 Diane TroutMerge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor... tree | commitdiff
2012-06-14 Diane TroutSlightly different sort order for finding libraries tree | commitdiff
2012-05-31 Diane TroutFixup docstring to be clearer to others tree | commitdiff
2012-05-25 Diane TroutMerge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor... tree | commitdiff
2012-05-25 Diane TroutMerge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor... tree | commitdiff
2012-05-23 Diane TroutGenerate html reports when doing sparql queries with... tree | commitdiff
2012-05-12 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-05-12 Diane TroutI found this version more useful for trying to tree | commitdiff
2012-04-17 Diane TroutAdd ability to override location to tar and lftp commands tree | commitdiff
2012-04-16 Diane TroutFix a typo and a missing .items() from the change of... tree | commitdiff
2012-04-13 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-04-11 Diane TroutStart developing GEO SOFT submission tool. tree | commitdiff
2012-04-11 Diane TroutMove code out of ucsc_gather and into the htsworkflow... tree | commitdiff
2012-03-27 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-03-27 Diane TroutAdd an option to make a mini archive containing just... tree | commitdiff
2012-03-26 Diane TroutRemove a function from the inifile version of ucsc_gather tree | commitdiff
2012-03-23 Diane TroutAdd a rdf type for ucsc track records tree | commitdiff
2012-03-08 Diane TroutChange name of term used for conditions to condition_term tree | commitdiff
2012-03-07 Diane TroutAdd extract HiSeq project based split fastq files to... tree | commitdiff
2012-02-02 Diane TroutMake report prettier. tree | commitdiff
2012-01-31 Diane TroutShorten option for specifying model name. tree | commitdiff
2012-01-30 Diane TroutFix a typo in some RDF example data tree | commitdiff
2012-01-30 Diane TroutMake it possible to filter which genome to run report... tree | commitdiff
2012-01-30 Diane TroutAdd ability to refresh library data from our htsw server tree | commitdiff
2012-01-25 Diane TroutStart writing a report for "so, what experiments have... tree | commitdiff
2012-01-25 Diane TroutAdded scanning for libraries that aren't attached to... tree | commitdiff
2012-01-25 Diane TroutFix 'typo' in a library URN. tree | commitdiff
2011-12-20 Diane TroutHandle dateTime timestamps in RDF.Nodes tree | commitdiff
2011-12-20 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2011-12-20 Diane TroutMove ucsc_encode_submission code out of extra so nose... tree | commitdiff
htsworkflow sequencing LIMS software