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mark the example submission rule files as being raw, so the escapes dont get confused
[htsworkflow.git] / extra /
2011-12-20 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2011-12-20 Diane TroutMove ucsc_encode_submission code out of extra so nose... tree | commitdiff
2011-12-20 Diane TroutRemove eXecute bit from modules tree | commitdiff
2011-12-20 Diane TroutInclude the test data for testing importing ucsc downlo... tree | commitdiff
2011-12-20 Diane TroutDeleted obsolete tests tree | commitdiff
2011-12-20 Diane TroutTry to figure out where UCSC is hosting our submitted... tree | commitdiff
2011-11-05 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2011-11-04 Diane TroutUse a logger initialized to the module name much more... tree | commitdiff
2011-09-30 Diane TroutSparql query to back create protocol & treatment from... tree | commitdiff
2011-09-30 Diane Troutfind submissions, even those without a set creation... tree | commitdiff
2011-09-30 Diane Troutstore md5sum of daf files to group different submissions tree | commitdiff
2011-09-30 Diane TroutConfigure daf variables in only one place. (daf.py) tree | commitdiff
2011-09-21 Diane TroutSwitch from beautifulsoup to lxml, now that I know... tree | commitdiff
2011-09-21 Diane TroutRename ucsc submission namespace to be more consistent... tree | commitdiff
2011-09-02 Diane TroutAttempt to download DAF data for a encodesubmit submission tree | commitdiff
2011-09-02 Diane TroutAdd error message for requesting link-daf but no daf... tree | commitdiff
2011-07-28 Diane TroutExamine the DAF to determine if the DDF needs to includ... tree | commitdiff
2011-07-20 Diane TroutStop copying attributes from library to a submission... tree | commitdiff
2011-07-20 Diane TroutAdd an option to print out an example view to extension... tree | commitdiff
2011-07-20 Diane TroutMake searching library & cell line more robust to missi... tree | commitdiff
2011-07-20 Diane TroutSearch for both encode & mouse encode projects. tree | commitdiff
2011-07-20 Diane TroutUpdate old dt-overrides.turtle example to use the newer... tree | commitdiff
2011-07-07 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2011-07-07 Diane TroutFix namespace issues in encode_find after the conversion tree | commitdiff
2011-06-30 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2011-06-30 Diane TroutThe proper DDF variable name for files to be submitted... tree | commitdiff
2011-06-30 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2011-06-30 Diane Troutswitch fix_ob3 to the better way of finding settings... tree | commitdiff
2011-06-29 Diane TroutFurther clean up ddf generation. tree | commitdiff
2011-06-23 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2011-06-22 Diane Troutallow running ucsc_gather --fastq without specifying... tree | commitdiff
2011-06-21 Diane TroutFinish new RDF based ddf construction. tree | commitdiff
2011-06-18 Diane TroutRework ucsc gather to use RDF models for gathering... tree | commitdiff
2011-06-18 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2011-06-17 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2011-06-15 Diane TroutStart to move all the RDF namespace definitions into... tree | commitdiff
2011-06-15 Diane TroutMove code to make srf and qseq to fastq condor scripts... tree | commitdiff
2011-05-26 Diane TroutMerge branch 'add-condition' tree | commitdiff
2011-05-18 Diane TroutWrite the librdf model database somewhere other than... tree | commitdiff
2011-05-09 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2011-05-09 Diane TroutAdd utility program to help find what exists in georgi... tree | commitdiff
2011-04-06 Diane Troutdjango-nose didn't work with django 1.1, so I went... tree | commitdiff
2011-04-02 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2011-03-30 Diane TroutUpdate single vs paired guessing code tree | commitdiff
2011-02-26 Diane TroutSave the overrides to the RDF model. tree | commitdiff
2011-02-26 Diane TroutOnly pull web data when its missing from the rdf model. tree | commitdiff
2011-02-17 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2011-02-17 Diane TroutMajor updateds to encode_find for extracting encode... tree | commitdiff
2011-02-17 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2011-02-16 Diane TroutAdd in patterns for Encode Elements submission tree | commitdiff
2011-02-15 Diane TroutStarting component to try and figure out what we've... tree | commitdiff
2011-02-15 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2011-02-15 Diane TroutMake plus/minus bigwig filename extension a bit more... tree | commitdiff
2011-02-14 Diane TroutAdd in support for generating md5sums for files tree | commitdiff
2011-01-25 rootMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2011-01-25 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2011-01-21 Diane TroutUpdate view names as per Cricket for the Jan 21st encod... tree | commitdiff
2011-01-21 Diane TroutMerge branch 'master' of gitosis@mus.cacr.caltech.edu... tree | commitdiff
2011-01-21 Diane TroutAdd function to ucsc submission tool to make symlink... tree | commitdiff
2010-12-21 Diane TroutAdd utility to fix the off-by-3 error in the amplified... tree | commitdiff
2010-11-17 Diane TroutCache the attributes for each type of fastq file. tree | commitdiff
2010-11-16 Diane TroutMap junctions.bed to the Junctions view. tree | commitdiff
2010-11-16 Diane TroutAutodetect location of *2fastq scripts tree | commitdiff
2010-11-15 Diane TroutDon't count failed flowcells when guessing if a library... tree | commitdiff
2010-11-07 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2010-11-05 Diane TroutUpdate to the new UCSC DAF file. tree | commitdiff
2010-11-03 Diane TroutCreate a class to handle mapping extension to ucsc... tree | commitdiff
2010-11-02 Diane TroutTwo lines between functions (trivial change) tree | commitdiff
2010-10-22 Diane TroutReport version number derived from git tag. tree | commitdiff
2010-08-24 Diane TroutSplit parts of build_fastqs into a seperate function. tree | commitdiff
2010-07-14 Diane TroutGeorgi used slightly different extensions for the secon... tree | commitdiff
2010-07-12 Diane TroutUse the htsworkflow API to determine if a flowcell... tree | commitdiff
2010-07-09 Diane TroutSince srf2named_fastq detects what type of srf file... tree | commitdiff
2010-07-08 Diane TroutAdd option to force overwriting old fastqs. tree | commitdiff
2010-06-22 Diane TroutSave changes needed to submit to UCSC in Jun 2010. tree | commitdiff
2010-06-11 Diane TroutCollect fastqs by read and add them to the configuratio... tree | commitdiff
2010-06-11 Diane TroutPut partial support back in for srf files. tree | commitdiff
2010-06-10 Diane TroutAdd script to try and build submissions to the UCSC... tree | commitdiff
htsworkflow sequencing LIMS software