From 0a187c4b80c5525ac1255774c8b253939b847594 Mon Sep 17 00:00:00 2001 From: Diane Trout Date: Wed, 18 Mar 2009 19:24:41 +0000 Subject: [PATCH] Actually we want fastq files, not scarf files --- htsworkflow/frontend/eland_config/views.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/htsworkflow/frontend/eland_config/views.py b/htsworkflow/frontend/eland_config/views.py index 31b970f..02b3f13 100644 --- a/htsworkflow/frontend/eland_config/views.py +++ b/htsworkflow/frontend/eland_config/views.py @@ -354,7 +354,7 @@ def getElandConfig(flowcell, regenerate=False): data.append('%s:ELAND_GENOME %s' % (lanes, '%%(%s)s' % (genome))) data.append('%s:USE_BASES %s' % (lanes, 'Y'*int(read_length))) - data.append('SEQUENCE_FORMAT --scarf') + data.append('SEQUENCE_FORMAT --fastq') data = '\n'.join(data) -- 2.30.2