From 0ebdde76c9a3d2dd22e058c23339b0c16c17f140 Mon Sep 17 00:00:00 2001 From: Diane Trout Date: Tue, 20 Oct 2015 16:50:44 -0700 Subject: [PATCH] this works better with python 3... --- htsworkflow/pipelines/desplit_fastq.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/htsworkflow/pipelines/desplit_fastq.py b/htsworkflow/pipelines/desplit_fastq.py index 6fe8d07..46a7509 100644 --- a/htsworkflow/pipelines/desplit_fastq.py +++ b/htsworkflow/pipelines/desplit_fastq.py @@ -31,9 +31,9 @@ def main(cmdline=None): if opts.output is not None: if opts.bzip: - output = bz2.BZ2File(opts.output, 'wt') + output = bz2.open(opts.output, 'wt') elif opts.gzip: - output = gzip.GzipFile(opts.output, 'wt') + output = gzip.open(opts.output, 'wt') else: output = open(opts.output, 'w') else: -- 2.30.2