From 13c4ee0105fd6eb935525130ffca96a4c69bc191 Mon Sep 17 00:00:00 2001
From: Diane Trout <diane@caltech.edu>
Date: Tue, 1 Dec 2009 02:03:04 +0000
Subject: [PATCH] Also include the read ID in the fastq header

---
 scripts/qseq2fastq | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/scripts/qseq2fastq b/scripts/qseq2fastq
index 56589ee..4262898 100644
--- a/scripts/qseq2fastq
+++ b/scripts/qseq2fastq
@@ -56,13 +56,14 @@ def qseq2fastq(destination, qseqs, trim=None):
             
             pass_qc = record[10]
 
-            destination.write('@%s_%s:%s:%s:%s:%s pf=%s%s' % ( \
+            destination.write('@%s_%s:%s:%s:%s:%s/%s pf=%s%s' % ( \
                 machine_name,
                 run_number,
                 lane_number,
                 tile,
                 x,
                 y,
+                read,
                 pass_qc,
                 os.linesep))
             destination.write(sequence[trim])
-- 
2.30.2