From 2654f09ebc4d3c58342d815114a736fbcf964f8e Mon Sep 17 00:00:00 2001 From: Diane Trout Date: Tue, 17 Feb 2009 22:39:59 +0000 Subject: [PATCH] remove cfg_defaults. It was part of an idea I was starting to implement but I didn't actually do it, so now its just causing problems --- htsworkflow/pipelines/configure_run.py | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/htsworkflow/pipelines/configure_run.py b/htsworkflow/pipelines/configure_run.py index 2174de1..4d5cf86 100644 --- a/htsworkflow/pipelines/configure_run.py +++ b/htsworkflow/pipelines/configure_run.py @@ -351,8 +351,7 @@ def pipeline_stderr_handler(line, conf_info): return False -def retrieve_config(conf_info, flowcell, cfg_filepath, genome_dir, - cfg_defaults=None): +def retrieve_config(conf_info, flowcell, cfg_filepath, genome_dir): """ Gets the config file from server... requires config file in: @@ -366,7 +365,7 @@ def retrieve_config(conf_info, flowcell, cfg_filepath, genome_dir, return True if successful, False is failure """ - options = getCombinedOptions(cfg_defaults) + options = getCombinedOptions() if options.url is None: logging.error("%s or %s missing base_host_url option" % \ -- 2.30.2