From 2e37c237a53320f04dc7d21647121f605d429054 Mon Sep 17 00:00:00 2001 From: Diane Trout Date: Wed, 14 Jul 2010 22:32:16 +0000 Subject: [PATCH] Georgi used slightly different extensions for the second batch of data --- extra/ucsc_encode_submission/ucsc_gather.py | 3 +++ 1 file changed, 3 insertions(+) diff --git a/extra/ucsc_encode_submission/ucsc_gather.py b/extra/ucsc_encode_submission/ucsc_gather.py index 7480231..3830dbe 100755 --- a/extra/ucsc_encode_submission/ucsc_gather.py +++ b/extra/ucsc_encode_submission/ucsc_gather.py @@ -257,10 +257,13 @@ def make_submission_ini(host, apidata, library_result_map, paired=True): '.condor': {'view': None}, '.daf': {'view': None}, '.ddf': {'view': None}, + 'denovo.genes.expr': {'view': 'GeneDeNovo', 'MapAlgorithm': ma}, + 'denovo.transcripts.expr': {'view': 'TranscriptDeNovo', 'MapAlgorithm': ma}, 'novel.genes.expr': {'view': 'GeneDeNovo', 'MapAlgorithm': ma}, 'novel.transcripts.expr': {'view': 'TranscriptDeNovo', 'MapAlgorithm': ma}, '.genes.expr': {'view': 'GeneFPKM', 'MapAlgorithm': ma}, '.transcripts.expr': {'view': 'TranscriptFPKM', 'MapAlgorithm': ma}, + '.transcript.expr': {'view': 'TranscriptFPKM', 'MapAlgorithm': ma}, '.fastq': {'view': 'Fastq', 'MapAlgorithm': 'NA' }, '_r1.fastq': {'view': 'FastqRd1', 'MapAlgorithm': 'NA'}, '_r2.fastq': {'view': 'FastqRd2', 'MapAlgorithm': 'NA'}, -- 2.30.2