From 39dea5abfab1e5404e9725a596dc675ad106fb90 Mon Sep 17 00:00:00 2001
From: Diane Trout <diane@caltech.edu>
Date: Thu, 8 Sep 2011 15:12:50 -0700
Subject: [PATCH] Add links to the admin page on the public pages if you're
 logged in as staff.

This also required tightening the css for the list of flowcells on the
inventory page.
---
 htsworkflow/frontend/static/css/app.css       |  9 ++++---
 .../frontend/static/css/click-table.css       |  3 ++-
 .../experiments/flowcell_detail.html          | 18 ++++++++-----
 .../inventory/inventory_itemtype_index.html   |  8 +++---
 .../templates/samples/library_detail.html     | 26 ++++++++++++-------
 5 files changed, 40 insertions(+), 24 deletions(-)

diff --git a/htsworkflow/frontend/static/css/app.css b/htsworkflow/frontend/static/css/app.css
index 72a626c..1725e15 100644
--- a/htsworkflow/frontend/static/css/app.css
+++ b/htsworkflow/frontend/static/css/app.css
@@ -40,6 +40,7 @@ div.msg {
 }
 
 div.htswdetail {
+    clear: both;
     margin: 0;
     padding: 0;
 }
@@ -80,7 +81,7 @@ div.htswdetail ol,
 div.htswdetail li
 {
   list-style: none;
-  margin: 0;   
+  margin: 0;
 }
 
 div.htswdetail ul,
@@ -89,7 +90,7 @@ div.htswdetail ol
   margin-bottom: .5em;
 }
 
-/* style library detail headers */ 
+/* style library detail headers */
 div#librarydetail {
   margin: 0;
   padding: 0;
@@ -131,7 +132,7 @@ div#librarydetail ol,
 div#librarydetail li
 {
   list-style: none;
-  margin: 0;   
+  margin: 0;
 }
 
 div#librarydetail ul,
@@ -140,7 +141,7 @@ div#librarydetail ol
   margin-bottom: .5em;
 }
 
-div.library_identity { 
+div.library_identity {
   clear: left; float: left; margin: 5px; }
 div.library_sample_detail { float: left; margin: 5px; }
 div.library_library_detail { float: left; margin: 5px; }
diff --git a/htsworkflow/frontend/static/css/click-table.css b/htsworkflow/frontend/static/css/click-table.css
index 1d48412..27b793c 100644
--- a/htsworkflow/frontend/static/css/click-table.css
+++ b/htsworkflow/frontend/static/css/click-table.css
@@ -14,6 +14,7 @@ td {
   padding: 4px;
   border-width: 1px 1px 0 0;
 }
-td a {
+td.cell_list a {
   display: block;
 }
+
diff --git a/htsworkflow/frontend/templates/experiments/flowcell_detail.html b/htsworkflow/frontend/templates/experiments/flowcell_detail.html
index 5ec9afe..a835a6e 100644
--- a/htsworkflow/frontend/templates/experiments/flowcell_detail.html
+++ b/htsworkflow/frontend/templates/experiments/flowcell_detail.html
@@ -4,7 +4,7 @@
     <!-- App Stuff -->
     <link type="text/css" rel="stylesheet" href="/static/css/app.css" />
     <script type="text/javascript" src="/static/js/jquery.min.js"></script>
-    
+
     {% block additional_javascript %}
     {% endblock %}
 {% endblock %}
@@ -27,11 +27,17 @@
       <tbody>
       {% for lane in lanes %}
         <tr rel="libns:has_lane" resource="{{lane.get_absolute_url}}" >
-          <td><a href="{{lane.get_absolute_url}}"> 
+          <td><a href="{{lane.get_absolute_url}}">
               <span property="libns:lane_number">{{lane.lane_number}}</span></a></td>
-          <td><a href="{{lane.library.get_absolute_url}}" 
+          <td><a href="{{lane.library.get_absolute_url}}"
                  rel="libns:library"><span property="libns:library_id"
-              >{{lane.library.id}}</span></a></td>
+              >{{lane.library.id}}</span></a>
+              {% if user.is_staff %}
+              <a href="{{lane.library.get_admin_url}}">
+                  <img class="icon_button"
+                       src="/media/img/admin/icon_changelink.gif"/>
+              </a>{% endif %}
+          </td>
           <td><a href="{{lane.library.get_absolute_url}}" rel="libns:library"><span property="libns:name">{{lane.library.library_name}}</span></a></td>
           <td><a href="{{lane.library.library_species.get_absolute_url}}" rel="libns:species">
               <span property="libns:species_name">{{ lane.library.library_species.scientific_name }}</span></a></td>
@@ -85,10 +91,10 @@
               </td>
             </tr>
             {% endif %}
-            {% endfor %} 
+            {% endfor %}
          </tbody>
        </table>
     {% endfor %}
     </div>
-</div>  
+</div>
 {% endblock %}
diff --git a/htsworkflow/frontend/templates/inventory/inventory_itemtype_index.html b/htsworkflow/frontend/templates/inventory/inventory_itemtype_index.html
index d3a0038..62ebdce 100644
--- a/htsworkflow/frontend/templates/inventory/inventory_itemtype_index.html
+++ b/htsworkflow/frontend/templates/inventory/inventory_itemtype_index.html
@@ -20,7 +20,7 @@
 <div id="inventory-index-div" >
   <div class="module{% if cl.has_filters %} filtered{% endif %}" id="changelist">
     {% block search %}{% search_form item_changelist %}{% endblock %}
- 
+
     {% block pagination %}{% pagination item_changelist %}{% endblock %}
 
     {% block filters %}
@@ -53,9 +53,9 @@
         <td ><a href="/inventory/{{ item.barcode_id }}/" rel="invns:barcode">{{ item.barcode_id }}</a></td>
         <td property="invns:location">{{ item.location }}</td>
         <td property="invns:item_type">{{ item.item_type }}</td>
-        <td ></td>      
-        <td property="invnfs:creation_date" content="{{item.creation_date|date:'Y-m-d\TH:i:s'}}" datatype="xsd:dateTime">{{ item.creation_date }}</td>      
-        <td style="a {display inline}">
+        <td ></td>
+        <td property="invnfs:creation_date" content="{{item.creation_date|date:'Y-m-d\TH:i:s'}}" datatype="xsd:dateTime">{{ item.creation_date }}</td>
+        <td class="cell_list" >
           {% for content in item.longtermstorage_set.all %}
           <a href="{{content.flowcell.get_absolute_url}}" rel="libns:flowcell_id">{{ content.flowcell }}</a>
           {% endfor %}
diff --git a/htsworkflow/frontend/templates/samples/library_detail.html b/htsworkflow/frontend/templates/samples/library_detail.html
index 918dc4f..771538c 100644
--- a/htsworkflow/frontend/templates/samples/library_detail.html
+++ b/htsworkflow/frontend/templates/samples/library_detail.html
@@ -4,7 +4,7 @@
     <!-- App Stuff -->
     <link type="text/css" rel="stylesheet" href="/static/css/app.css" />
     <script type="text/javascript" src="/static/js/jquery.min.js"></script>
-    
+
     {% block additional_javascript %}
     {% endblock %}
 {% endblock %}
@@ -32,7 +32,7 @@
     <tr about="{{result.flowcell.get_absolute_url}}">
       <td property="libns:date" content="{{result.run_date|date:'Y-m-d\TH:i:s'}}" datatype="xsd:dateTime">{{ result.run_date|date}}</td>
       <td>{{ result.cycle }}</td>
-      <td><a href="{{result.flowcell.get_absolute_url}}"><span property="libns:flowcell_id">{{ result.flowcell_id }}</span></a></td>
+      <td><a href="{{result.flowcell.get_absolute_url}}"><span property="libns:flowcell_id">{{ result.flowcell_id }}</span></a>{% if user.is_staff %}<a href="{{result.flowcell.get_admin_url}}"><img class="icon_button" src="/media/img/admin/icon_changelink.gif" alt="Edit"/></a>{% endif%}</td>
       <td><a href="{{result.lane.get_absolute_url}}" rel="libns:has_lane"><span property="libns:lane_number" datatype="xsd:decimal">{{ result.lane.lane_number }}</span></a></td>
       <td><a href="{{ result.summary_url }}">Summary</a></td>
       <td><a href="{{ result.result_url }}">{{ result.result_label }}</a></td>
@@ -50,7 +50,7 @@
     {% endfor %}
   </tbody>
   </table>
-  
+
   <h2>Lane Summary Statistics</h2>
   {% block summary_stats %}
   <table>
@@ -85,12 +85,13 @@
       </tr>
     </thead>
     <tbody>
-  
+
       {# ls short for lane summary #}
       {% for ls in lane_summary_list %}
       <tr about="{{ls.lane.get_absolute_url}}">
         <td>{{ ls.cycle_width }}</td>
-        <td><a href="{{ls.flowcell.get_absolute_url}}">{{ ls.flowcell_id }}</a></td>
+        <td><a href="{{ls.flowcell.get_absolute_url}}">{{ ls.flowcell_id }}</a>
+        </td>
         <td><a href="{{ls.lane.get_absolute_url}}">{{ ls.lane_id }}</a></td>
         <td>{% if ls.end %}{{ ls.end }}{% endif %}</td>
         <td>{{ ls.clusters.0|intcomma }}</td>
@@ -126,8 +127,15 @@
       {% for lane in lib.lane_set.all %}
       <tr rel="libns:has_lane" resource="{{lane.get_absolute_url}}">
         <td><a href="{{lane.flowcell.get_absolute_url}}" rel="libns:flowcell"
-            ><span property="libns:flowcell_id">{{ lane.flowcell.flowcell_id }}</span></a></td>
-        <td><a href="{{lane.get_absolute_url}}"> 
+            ><span property="libns:flowcell_id">{{ lane.flowcell.flowcell_id }}</span></a>
+          {% if user.is_staff %}
+            <a href="{{lane.flowcell.get_admin_url}}">
+               <img class="icon_button"
+                    src="/media/img/admin/icon_changelink.gif" alt="Edit"/>
+            </a>
+          {% endif%}
+        </td>
+        <td><a href="{{lane.get_absolute_url}}">
             <span property="libns:lane_number"  datatype="xsd:decimal"
                >{{ lane.lane_number }}</span></a></td>
         <td>{{ lane.comment }}</td>
@@ -140,13 +148,13 @@
   <h2>Count of multi-reads</h2>
   {% for eland_lane in lane_summary_list %}
     {% if eland_lane.summarized_reads %}
-    <h3>{{eland_lane.cycle_width}} {{ eland_lane.flowcell_id }} lane {{ eland_lane.lane_id }} 
+    <h3>{{eland_lane.cycle_width}} {{ eland_lane.flowcell_id }} lane {{ eland_lane.lane_id }}
       {% if eland_lane.end %} end {{ eland_lane.end }}{% endif %}
     </h3>
     <ul about="{{eland_lane.lane.get_absolute_url}}">
       {% for name, counts in eland_lane.summarized_reads.items %}
       <li rel="libns:has_mappings">
-         <b property="libns:mapped_to">{{ name }}</b>: 
+         <b property="libns:mapped_to">{{ name }}</b>:
          <span property="libns:reads" content="{{counts}}" datatype="xsd:integer">{{ counts|intcomma }}</span></li>
       {% endfor %}
     </ul>
-- 
2.30.2