From 624f018999b8df123ce8284272a6f4429017f0c6 Mon Sep 17 00:00:00 2001
From: Diane Trout <diane@ghic.org>
Date: Thu, 29 Jan 2015 10:44:00 -0800
Subject: [PATCH] use six.moves to get to python3-style urllib

---
 htsworkflow/util/api.py    | 10 ++++------
 htsworkflow/util/opener.py |  6 +++---
 samples/models.py          |  1 -
 3 files changed, 7 insertions(+), 10 deletions(-)

diff --git a/htsworkflow/util/api.py b/htsworkflow/util/api.py
index ce97e18..f7272bc 100644
--- a/htsworkflow/util/api.py
+++ b/htsworkflow/util/api.py
@@ -13,9 +13,7 @@ except ImportError:
 
 import os
 from optparse import OptionGroup
-import urllib
-import urllib2
-import urlparse
+from six.moves import urllib
 
 LOGGER = logging.getLogger(__name__)
 
@@ -129,9 +127,9 @@ def retrieve_info(url, apidata):
     Return a dictionary from the HTSworkflow API
     """
     try:
-        apipayload = urllib.urlencode(apidata)
-        web = urllib2.urlopen(url, apipayload)
-    except urllib2.URLError as e:
+        apipayload = urllib.parse.urlencode(apidata)
+        web = urllib.request.urlopen(url, apipayload)
+    except urllib.request.URLError as e:
         if hasattr(e, 'code') and e.code == 404:
             LOGGER.info("%s was not found" % (url,))
             return None
diff --git a/htsworkflow/util/opener.py b/htsworkflow/util/opener.py
index 035bb24..6d5e2c0 100644
--- a/htsworkflow/util/opener.py
+++ b/htsworkflow/util/opener.py
@@ -5,7 +5,7 @@ import os
 import gzip
 import bz2
 import types
-import urllib2
+from six.moves import urllib
 
 def isfilelike(file_ref, mode):
     """Does file_ref have the core file operations?
@@ -31,7 +31,7 @@ def isurllike(file_ref, mode):
     (AKA does it start with protocol:// ?)
     """
     #what if mode is 'w'?
-    parsed = urllib2.urlparse.urlparse(file_ref)
+    parsed = urllib.parse.urlparse(file_ref)
     schema, netloc, path, params, query, fragment = parsed
     
     return len(schema) > 0
@@ -47,7 +47,7 @@ def autoopen(file_ref, mode='r'):
     elif isfilelike(file_ref, mode):
         return file_ref
     elif isurllike(file_ref, mode):
-        return urllib2.urlopen(file_ref)
+        return urllib.request.urlopen(file_ref)
     elif os.path.splitext(file_ref)[1] == ".gz":
         return gzip.open(file_ref, mode)
     elif os.path.splitext(file_ref)[1] == '.bz2':
diff --git a/samples/models.py b/samples/models.py
index 21b6f40..5cf2e90 100644
--- a/samples/models.py
+++ b/samples/models.py
@@ -1,6 +1,5 @@
 import types
 import logging
-import urlparse
 from django.db import models
 from django.contrib.auth.models import User, UserManager
 from django.core import urlresolvers
-- 
2.30.2