From 6d1e134c0f3755940189bbd1ed3f00957370479a Mon Sep 17 00:00:00 2001 From: Diane Trout Date: Mon, 15 Nov 2010 17:41:04 -0800 Subject: [PATCH] Map junctions.bed to the Junctions view. Hopefully it'll pass validation and not be treated as a bed file, even though it ends in the .bed extension. (There were lots of problems with a previous subission because the cufflinks bed file was almost but not quite a match to ucsc's bed file validator. Or maybe they caved on the definition of a score.) --- extra/ucsc_encode_submission/ucsc_gather.py | 1 + 1 file changed, 1 insertion(+) diff --git a/extra/ucsc_encode_submission/ucsc_gather.py b/extra/ucsc_encode_submission/ucsc_gather.py index 37ef731..72d7f32 100755 --- a/extra/ucsc_encode_submission/ucsc_gather.py +++ b/extra/ucsc_encode_submission/ucsc_gather.py @@ -596,6 +596,7 @@ class NameToViewMap(object): ('*.bai', None), ('*.bam', self._guess_bam_view), ('*.splices.bam', 'Splices'), + ('junctions.bed', 'Junctions'), ('*.jnct', 'Junctions'), ('*.plus.bigwig', 'PlusSignal'), ('*.minus.bigwig', 'MinusSignal'), -- 2.30.2