From 96f3f3fe25d69a185d1e925eb6532ae87e90ecad Mon Sep 17 00:00:00 2001 From: Diane Trout Date: Fri, 13 Feb 2009 21:41:43 +0000 Subject: [PATCH] save longer comment describing change --- htsworkflow/pipelines/eland.py | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/htsworkflow/pipelines/eland.py b/htsworkflow/pipelines/eland.py index bdbe575..edd9036 100644 --- a/htsworkflow/pipelines/eland.py +++ b/htsworkflow/pipelines/eland.py @@ -127,8 +127,10 @@ class ElandLane(object): if groups is None: match_codes[fields[2]] += 1 else: - # when there are too many hit, eland writes a - where - # it would have put the list of hits + # when there are too many hit, eland writes a - where + # it would have put the list of hits. + # or in a different version of eland, it just leaves + # that column blank, and only outputs 3 fields. if len(fields) < 4 or fields[3] == '-': continue zero_mismatches = int(groups.group(1)) -- 2.30.2