From a70eb4b6e40bf3764173447a7f12dc5475fa9ca9 Mon Sep 17 00:00:00 2001 From: Diane Trout Date: Thu, 23 Oct 2014 16:14:44 -0700 Subject: [PATCH] most of our test submission rule files use bz2 regexes, so lets make those files --- .../submission/test/submission_test_common.py | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/htsworkflow/submission/test/submission_test_common.py b/htsworkflow/submission/test/submission_test_common.py index 3f43576..e1e5eb0 100644 --- a/htsworkflow/submission/test/submission_test_common.py +++ b/htsworkflow/submission/test/submission_test_common.py @@ -11,21 +11,21 @@ S2_NAME = '2000-sample' SCOMBINED_NAME = 'directory' S1_FILES = [ - os.path.join(S1_NAME, 'file1_l8_r1.fastq'), - os.path.join(S1_NAME, 'file1_l8_r2.fastq'), + os.path.join(S1_NAME, 'file1_l8_r1.fastq.bz2'), + os.path.join(S1_NAME, 'file1_l8_r2.fastq.bz2'), ] S2_FILES = [ os.path.join(S2_NAME, 'file1.bam'), - os.path.join(S2_NAME, 'file1_l5.fastq'), + os.path.join(S2_NAME, 'file1_l5.fastq.bz2'), ] SCOMBINED_FILES = [ os.path.join(SCOMBINED_NAME, 's1_file1.bam'), - os.path.join(SCOMBINED_NAME, 's1_l5.fastq'), + os.path.join(SCOMBINED_NAME, 's1_l5.fastq.bz2'), os.path.join(SCOMBINED_NAME, 's2_file1.bam'), - os.path.join(SCOMBINED_NAME, 's2_l4.read1.fastq'), - os.path.join(SCOMBINED_NAME, 's2_l4.read2.fastq'), + os.path.join(SCOMBINED_NAME, 's2_l4.read1.fastq.bz2'), + os.path.join(SCOMBINED_NAME, 's2_l4.read2.fastq.bz2'), ] TURTLE_PREFIX = htsworkflow.util.rdfhelp.get_turtle_header() -- 2.30.2