From ae27c9b29584f32fc454306442fcfda3038a5293 Mon Sep 17 00:00:00 2001 From: Diane Trout Date: Mon, 14 Feb 2011 16:49:46 -0800 Subject: [PATCH] Make plus/minus bigwig filename extension a bit more lax. *plus.bigwig vs *.plus.bigwig --- extra/ucsc_encode_submission/ucsc_gather.py | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/extra/ucsc_encode_submission/ucsc_gather.py b/extra/ucsc_encode_submission/ucsc_gather.py index 5032fc8..7650a94 100755 --- a/extra/ucsc_encode_submission/ucsc_gather.py +++ b/extra/ucsc_encode_submission/ucsc_gather.py @@ -307,9 +307,9 @@ def make_submission_ini(host, apidata, library_result_map, paired=True): fastq_attributes = {} for f in submission_files: attributes = view_map.find_attributes(f, lib_id) - attributes['md5sum'] = "None" if attributes is None: raise ValueError("Unrecognized file: %s" % (f,)) + attributes['md5sum'] = "None" ext = attributes["extension"] if attributes['view'] is None: @@ -655,9 +655,9 @@ class NameToViewMap(object): ('*.bam', self._guess_bam_view), ('junctions.bed', 'Junctions'), ('*.jnct', 'Junctions'), - ('*.unique.bigwig', None), - ('*.plus.bigwig', 'PlusSignal'), - ('*.minus.bigwig', 'MinusSignal'), + ('*unique.bigwig', None), + ('*plus.bigwig', 'PlusSignal'), + ('*minus.bigwig', 'MinusSignal'), ('*.bigwig', 'Signal'), ('*.tar.bz2', None), ('*.condor', None), -- 2.30.2