From b3a5b6bb3bf8f76e1fc93b2a352bfcdc60c63ac9 Mon Sep 17 00:00:00 2001 From: Diane Trout Date: Mon, 10 Oct 2011 16:56:07 -0700 Subject: [PATCH] Don't need to duplicate %t tile in srf command --- htsworkflow/pipelines/srf.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/htsworkflow/pipelines/srf.py b/htsworkflow/pipelines/srf.py index 41724bf..ef724f1 100644 --- a/htsworkflow/pipelines/srf.py +++ b/htsworkflow/pipelines/srf.py @@ -50,7 +50,7 @@ def make_srf_commands(run_name, bustard_dir, lanes, site_name, destdir, cmdlevel cmd_list = [] for lane in lanes: - name_prefix = '%s_%%l_%%t_' % (run_name,) + name_prefix = '%s_%%l_' % (run_name,) destname = '%s_%s_%d.srf' % (site_name, run_name, lane) destdir = os.path.normpath(destdir) dest_path = os.path.join(destdir, destname) @@ -174,3 +174,4 @@ def make_md5_commands(destdir): cmd_list.append(cmd) return cmd_list + -- 2.30.2