From bcda5301706c2ff1744e70ca354ef29f60676110 Mon Sep 17 00:00:00 2001
From: Diane Trout <diane@ghic.org>
Date: Mon, 2 Feb 2015 14:54:28 -0800
Subject: [PATCH] take advantage of absolute_import to simplify import
 statements

---
 encode_submission/test_ucsc_gather.py                   | 4 +++-
 htsworkflow/pipelines/test/test_alignment_free.py       | 1 +
 htsworkflow/pipelines/test/test_extract_results.py      | 3 ++-
 htsworkflow/pipelines/test/test_run_xml.py              | 4 +++-
 htsworkflow/pipelines/test/test_runfolder026.py         | 3 ++-
 htsworkflow/pipelines/test/test_runfolder110.py         | 3 ++-
 htsworkflow/pipelines/test/test_runfolder_casava_1_7.py | 3 ++-
 htsworkflow/pipelines/test/test_runfolder_ipar100.py    | 3 ++-
 htsworkflow/pipelines/test/test_runfolder_ipar130.py    | 3 ++-
 htsworkflow/pipelines/test/test_runfolder_pair.py       | 3 ++-
 htsworkflow/pipelines/test/test_runfolder_rta.py        | 3 ++-
 htsworkflow/pipelines/test/test_runfolder_rta160.py     | 3 ++-
 htsworkflow/pipelines/test/test_runfolder_rta180.py     | 3 ++-
 htsworkflow/pipelines/test/test_runfolder_rta1_12.py    | 3 ++-
 htsworkflow/pipelines/test/test_summary.py              | 4 +++-
 htsworkflow/submission/test/test_results.py             | 3 ++-
 16 files changed, 34 insertions(+), 15 deletions(-)

diff --git a/encode_submission/test_ucsc_gather.py b/encode_submission/test_ucsc_gather.py
index 162f56a..9baf160 100644
--- a/encode_submission/test_ucsc_gather.py
+++ b/encode_submission/test_ucsc_gather.py
@@ -1,6 +1,8 @@
+from __future__ import absolute_import
+
 from unittest import TestCase, TestSuite, defaultTestLoader
 
-import ucsc_gather
+from . import ucsc_gather
 
 class testUCSCGather(TestCase):
     pass
diff --git a/htsworkflow/pipelines/test/test_alignment_free.py b/htsworkflow/pipelines/test/test_alignment_free.py
index ea6e2de..adbe33a 100644
--- a/htsworkflow/pipelines/test/test_alignment_free.py
+++ b/htsworkflow/pipelines/test/test_alignment_free.py
@@ -1,4 +1,5 @@
 #!/usr/bin/env python
+from __future__ import absolute_import
 
 from datetime import datetime, date
 import os
diff --git a/htsworkflow/pipelines/test/test_extract_results.py b/htsworkflow/pipelines/test/test_extract_results.py
index 29ab3fd..0d96a45 100644
--- a/htsworkflow/pipelines/test/test_extract_results.py
+++ b/htsworkflow/pipelines/test/test_extract_results.py
@@ -1,4 +1,5 @@
 #!/usr/bin/env python
+from __future__ import absolute_import
 
 from datetime import datetime, date
 import logging
@@ -15,7 +16,7 @@ from htsworkflow.pipelines import gerald
 from htsworkflow.pipelines import runfolder
 from htsworkflow.pipelines import ElementTree
 
-from htsworkflow.pipelines.test.simulate_runfolder import *
+from .simulate_runfolder import *
 
 logging.basicConfig(level=logging.ERROR)
 
diff --git a/htsworkflow/pipelines/test/test_run_xml.py b/htsworkflow/pipelines/test/test_run_xml.py
index 9ef8dd0..b311df2 100644
--- a/htsworkflow/pipelines/test/test_run_xml.py
+++ b/htsworkflow/pipelines/test/test_run_xml.py
@@ -1,8 +1,10 @@
+from __future__ import absolute_import
+
 import os
 from unittest import TestCase
 from six.moves import StringIO
 
-from simulate_runfolder import TESTDATA_DIR
+from .simulate_runfolder import TESTDATA_DIR
 from htsworkflow.pipelines.runfolder import load_pipeline_run_xml
 
 from htsworkflow.pipelines.eland import SampleKey
diff --git a/htsworkflow/pipelines/test/test_runfolder026.py b/htsworkflow/pipelines/test/test_runfolder026.py
index fe52a62..dcdd365 100644
--- a/htsworkflow/pipelines/test/test_runfolder026.py
+++ b/htsworkflow/pipelines/test/test_runfolder026.py
@@ -1,4 +1,5 @@
 #!/usr/bin/env python
+from __future__ import absolute_import
 
 from datetime import datetime, date
 import os
@@ -12,7 +13,7 @@ from htsworkflow.pipelines import gerald
 from htsworkflow.pipelines import runfolder
 from htsworkflow.pipelines import ElementTree
 
-from htsworkflow.pipelines.test.simulate_runfolder import *
+from .simulate_runfolder import *
 
 
 def make_summary_htm(gerald_dir):
diff --git a/htsworkflow/pipelines/test/test_runfolder110.py b/htsworkflow/pipelines/test/test_runfolder110.py
index bc2b3a6..266fcfd 100644
--- a/htsworkflow/pipelines/test/test_runfolder110.py
+++ b/htsworkflow/pipelines/test/test_runfolder110.py
@@ -1,4 +1,5 @@
 #!/usr/bin/env python
+from __future__ import absolute_import
 
 from datetime import datetime, date
 import os
@@ -12,7 +13,7 @@ from htsworkflow.pipelines import gerald
 from htsworkflow.pipelines import runfolder
 from htsworkflow.pipelines import ElementTree
 
-from htsworkflow.pipelines.test.simulate_runfolder import *
+from .simulate_runfolder import *
 
 
 def make_runfolder(obj=None):
diff --git a/htsworkflow/pipelines/test/test_runfolder_casava_1_7.py b/htsworkflow/pipelines/test/test_runfolder_casava_1_7.py
index 9936420..bb9ae5a 100644
--- a/htsworkflow/pipelines/test/test_runfolder_casava_1_7.py
+++ b/htsworkflow/pipelines/test/test_runfolder_casava_1_7.py
@@ -1,4 +1,5 @@
 #!/usr/bin/env python
+from __future__ import absolute_import
 
 from datetime import datetime, date
 import glob
@@ -15,7 +16,7 @@ from htsworkflow.pipelines import runfolder
 from htsworkflow.pipelines import srf
 from htsworkflow.pipelines import ElementTree
 
-from htsworkflow.pipelines.test.simulate_runfolder import *
+from .simulate_runfolder import *
 
 FCID = 'AA01AAABXX'
 RUN_NAME = '110420_SN787_0069_%s' %( FCID,)
diff --git a/htsworkflow/pipelines/test/test_runfolder_ipar100.py b/htsworkflow/pipelines/test/test_runfolder_ipar100.py
index 9de3653..054fbc7 100644
--- a/htsworkflow/pipelines/test/test_runfolder_ipar100.py
+++ b/htsworkflow/pipelines/test/test_runfolder_ipar100.py
@@ -1,4 +1,5 @@
 #!/usr/bin/env python
+from __future__ import absolute_import
 
 from datetime import datetime, date
 import os
@@ -12,7 +13,7 @@ from htsworkflow.pipelines import gerald
 from htsworkflow.pipelines import runfolder
 from htsworkflow.pipelines import ElementTree
 
-from htsworkflow.pipelines.test.simulate_runfolder import *
+from .simulate_runfolder import *
 
 
 def make_runfolder(obj=None):
diff --git a/htsworkflow/pipelines/test/test_runfolder_ipar130.py b/htsworkflow/pipelines/test/test_runfolder_ipar130.py
index 366f588..5fe6221 100644
--- a/htsworkflow/pipelines/test/test_runfolder_ipar130.py
+++ b/htsworkflow/pipelines/test/test_runfolder_ipar130.py
@@ -1,4 +1,5 @@
 #!/usr/bin/env python
+from __future__ import absolute_import
 
 from datetime import datetime, date
 import os
@@ -13,7 +14,7 @@ from htsworkflow.pipelines import gerald
 from htsworkflow.pipelines import runfolder
 from htsworkflow.pipelines import ElementTree
 
-from htsworkflow.pipelines.test.simulate_runfolder import *
+from .simulate_runfolder import *
 
 
 def make_runfolder(obj=None):
diff --git a/htsworkflow/pipelines/test/test_runfolder_pair.py b/htsworkflow/pipelines/test/test_runfolder_pair.py
index 355765e..4f4976e 100644
--- a/htsworkflow/pipelines/test/test_runfolder_pair.py
+++ b/htsworkflow/pipelines/test/test_runfolder_pair.py
@@ -1,4 +1,5 @@
 #!/usr/bin/env python
+from __future__ import absolute_import
 
 from datetime import datetime, date
 import os
@@ -13,7 +14,7 @@ from htsworkflow.pipelines.eland import SampleKey
 from htsworkflow.pipelines import runfolder
 from htsworkflow.pipelines import ElementTree
 
-from htsworkflow.pipelines.test.simulate_runfolder import *
+from .simulate_runfolder import *
 
 
 def make_runfolder(obj=None):
diff --git a/htsworkflow/pipelines/test/test_runfolder_rta.py b/htsworkflow/pipelines/test/test_runfolder_rta.py
index 9c2a3d1..371a49b 100644
--- a/htsworkflow/pipelines/test/test_runfolder_rta.py
+++ b/htsworkflow/pipelines/test/test_runfolder_rta.py
@@ -1,4 +1,5 @@
 #!/usr/bin/env python
+from __future__ import absolute_import
 
 from datetime import datetime, date
 import os
@@ -14,7 +15,7 @@ from htsworkflow.pipelines import runfolder
 from htsworkflow.pipelines.samplekey import SampleKey
 from htsworkflow.pipelines import ElementTree
 
-from htsworkflow.pipelines.test.simulate_runfolder import *
+from .simulate_runfolder import *
 
 
 def make_runfolder(obj=None):
diff --git a/htsworkflow/pipelines/test/test_runfolder_rta160.py b/htsworkflow/pipelines/test/test_runfolder_rta160.py
index 19b0cfa..621f32d 100644
--- a/htsworkflow/pipelines/test/test_runfolder_rta160.py
+++ b/htsworkflow/pipelines/test/test_runfolder_rta160.py
@@ -1,4 +1,5 @@
 #!/usr/bin/env python
+from __future__ import absolute_import
 
 from datetime import datetime, date
 import os
@@ -14,7 +15,7 @@ from htsworkflow.pipelines import runfolder
 from htsworkflow.pipelines.samplekey import SampleKey
 from htsworkflow.pipelines import ElementTree
 
-from htsworkflow.pipelines.test.simulate_runfolder import *
+from .simulate_runfolder import *
 
 
 def make_runfolder(obj=None):
diff --git a/htsworkflow/pipelines/test/test_runfolder_rta180.py b/htsworkflow/pipelines/test/test_runfolder_rta180.py
index 312d92f..df57cf4 100644
--- a/htsworkflow/pipelines/test/test_runfolder_rta180.py
+++ b/htsworkflow/pipelines/test/test_runfolder_rta180.py
@@ -1,4 +1,5 @@
 #!/usr/bin/env python
+from __future__ import absolute_import
 
 from datetime import datetime, date
 import os
@@ -14,7 +15,7 @@ from htsworkflow.pipelines import runfolder
 from htsworkflow.pipelines.samplekey import SampleKey
 from htsworkflow.pipelines import ElementTree
 
-from htsworkflow.pipelines.test.simulate_runfolder import *
+from .simulate_runfolder import *
 
 
 def make_runfolder(obj=None):
diff --git a/htsworkflow/pipelines/test/test_runfolder_rta1_12.py b/htsworkflow/pipelines/test/test_runfolder_rta1_12.py
index c22535b..c1a3314 100644
--- a/htsworkflow/pipelines/test/test_runfolder_rta1_12.py
+++ b/htsworkflow/pipelines/test/test_runfolder_rta1_12.py
@@ -1,4 +1,5 @@
 #!/usr/bin/env python
+from __future__ import absolute_import
 
 from datetime import datetime, date
 import logging
@@ -15,7 +16,7 @@ from htsworkflow.pipelines import gerald
 from htsworkflow.pipelines import runfolder
 from htsworkflow.pipelines import ElementTree
 
-from htsworkflow.pipelines.test.simulate_runfolder import *
+from .simulate_runfolder import *
 
 
 def make_runfolder(obj=None):
diff --git a/htsworkflow/pipelines/test/test_summary.py b/htsworkflow/pipelines/test/test_summary.py
index 835d206..98b4fd0 100644
--- a/htsworkflow/pipelines/test/test_summary.py
+++ b/htsworkflow/pipelines/test/test_summary.py
@@ -1,10 +1,12 @@
 #!/usr/bin/env python
+from __future__ import absolute_import
+
 import os
 from six.moves import StringIO
 from unittest import TestCase
 
 from htsworkflow.pipelines import summary
-from simulate_runfolder import TESTDATA_DIR
+from .simulate_runfolder import TESTDATA_DIR
 
 class SummaryTests(TestCase):
     """Test elements of the summary file parser
diff --git a/htsworkflow/submission/test/test_results.py b/htsworkflow/submission/test/test_results.py
index 08bb413..a755f6c 100644
--- a/htsworkflow/submission/test/test_results.py
+++ b/htsworkflow/submission/test/test_results.py
@@ -1,4 +1,5 @@
 #!/usr/bin/env python
+from __future__ import absolute_import
 
 from pprint import pprint
 import shutil
@@ -6,7 +7,7 @@ import shutil
 from unittest import TestCase, defaultTestLoader
 
 from htsworkflow.submission.results import ResultMap
-from submission_test_common import *
+from .submission_test_common import *
 
 class TestResultMap(TestCase):
     def setUp(self):
-- 
2.30.2