From d242342d007b534919ea733204853a1ad3370e37 Mon Sep 17 00:00:00 2001 From: Diane Trout Date: Fri, 8 Oct 2010 17:32:46 +0000 Subject: [PATCH] WITH_SEQUENCE is actually a global GERALD option, remove the lane specifier. --- htsworkflow/pipelines/retrieve_config.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/htsworkflow/pipelines/retrieve_config.py b/htsworkflow/pipelines/retrieve_config.py index c3f32c7..d2ee872 100644 --- a/htsworkflow/pipelines/retrieve_config.py +++ b/htsworkflow/pipelines/retrieve_config.py @@ -125,7 +125,7 @@ def format_gerald_config(options, flowcell_info, genome_map): config += ['SEQUENCE_FORMAT --fastq'] config += ['ELAND_SET_SIZE 20'] - config += ['12345678:WITH_SEQUENCE TRUE'] + config += ['WITH_SEQUENCE TRUE'] analysis_suffix = eland_analysis_suffix[flowcell_info['paired_end']] sequence_suffix = sequence_analysis_suffix[flowcell_info['paired_end']] lane_groups = group_lane_parameters(flowcell_info) -- 2.30.2