From dca410f958fd60ab2a3cddf217501b7820ef19c7 Mon Sep 17 00:00:00 2001 From: Diane Trout Date: Thu, 12 Jul 2012 10:59:19 -0700 Subject: [PATCH] Use lane 1s matrix when pipeline was set to build matrix from all. (HiSeq's pipeline doesn't make the lane-less matrix file) --- htsworkflow/pipelines/bustard.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/htsworkflow/pipelines/bustard.py b/htsworkflow/pipelines/bustard.py index 2c68f67..dd831a1 100644 --- a/htsworkflow/pipelines/bustard.py +++ b/htsworkflow/pipelines/bustard.py @@ -170,7 +170,8 @@ def crosstalk_matrix_from_bustard_config(bustard_path, bustard_config_tree): # we estimated the matrix from something in this run. # though we don't really care which lane it was if matrix_auto_lane == 0: - auto_lane_fragment = "" + # its defaulting to all of the lanes, so just pick one + auto_lane_fragment = "_1" else: auto_lane_fragment = "_%d" % ( matrix_auto_lane,) -- 2.30.2