From e963bc8bb8c64dd9bf0f992219fd3a327bde5bd4 Mon Sep 17 00:00:00 2001 From: Diane Trout Date: Fri, 23 Mar 2012 16:55:05 -0700 Subject: [PATCH] Apparently I forgot to remove a parameter why creating copy_hiseq_project_fastqs --- htsworkflow/pipelines/runfolder.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/htsworkflow/pipelines/runfolder.py b/htsworkflow/pipelines/runfolder.py index 4f871a2..3389c2d 100644 --- a/htsworkflow/pipelines/runfolder.py +++ b/htsworkflow/pipelines/runfolder.py @@ -557,7 +557,7 @@ def extract_results(runs, output_base_dir=None, site="individual", num_jobs=1, r run_name = srf.pathname_to_run_name(r.pathname) seq_cmds = [] if raw_format == 'fastq': - srf.copy_hiseq_project_fastqs(run_name, r.bustard.pathname, lanes, site, cycle_dir) + srf.copy_hiseq_project_fastqs(run_name, r.bustard.pathname, site, cycle_dir) elif raw_format == 'qseq': seq_cmds = srf.make_qseq_commands(run_name, r.bustard.pathname, lanes, site, cycle_dir) elif raw_format == 'srf': -- 2.30.2