From fdea826bf42947427fd5291f2412f0e6fb4e6feb Mon Sep 17 00:00:00 2001 From: Diane Trout Date: Mon, 22 Feb 2010 20:07:21 +0000 Subject: [PATCH] there is no such thing as sequence_extended. I was using the wrong suffix generator for paired end sequencing --- htsworkflow/pipelines/retrieve_config.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/htsworkflow/pipelines/retrieve_config.py b/htsworkflow/pipelines/retrieve_config.py index f9d4e3b..0ef42a5 100644 --- a/htsworkflow/pipelines/retrieve_config.py +++ b/htsworkflow/pipelines/retrieve_config.py @@ -140,7 +140,7 @@ def format_gerald_config(options, flowcell_info, genome_map): is_sequencing = True if is_sequencing: - config += ['%s:ANALYSIS sequence%s' % (lane_prefix, analysis_suffix)] + config += ['%s:ANALYSIS sequence%s' % (lane_prefix, sequence_suffix)] else: config += ['%s:ANALYSIS eland%s' % (lane_prefix, analysis_suffix)] config += ['%s:ELAND_GENOME %s' % (lane_prefix, species_path) ] -- 2.30.2