woldlab.caltech.edu Git - htsworkflow.git/shortlog

2009-08-06	Rami Rauch	(no commit message) htsworkflow	commit \| commitdiff \| tree \| snapshot
2009-07-08	Rami Rauch	(no commit message)	commit \| commitdiff \| tree \| snapshot
2009-07-08	Rami Rauch	(no commit message)	commit \| commitdiff \| tree \| snapshot
2009-06-26	Rami Rauch	(no commit message)	commit \| commitdiff \| tree \| snapshot
2009-05-21	Rami Rauch	small change	commit \| commitdiff \| tree \| snapshot
2009-05-14	Rami Rauch	upgraded to work with the upgraded MainPipelineScript	commit \| commitdiff \| tree \| snapshot
2009-05-14	Rami Rauch	upgraded to work both in standard and IPAR modes, and...	commit \| commitdiff \| tree \| snapshot
2009-05-04	Rami Rauch	fixed: read correctly the Lanes attribute in Track...	commit \| commitdiff \| tree \| snapshot
2009-05-04	Rami Rauch	small html change	commit \| commitdiff \| tree \| snapshot
2009-04-25	Rami Rauch	added: assembles reads count per Lane, besides total...	commit \| commitdiff \| tree \| snapshot
2009-04-25	Rami Rauch	added: display reads count per Lane, besides total...	commit \| commitdiff \| tree \| snapshot
2009-04-23	Rami Rauch	added FlowcellId data status (by read count from libinf...	commit \| commitdiff \| tree \| snapshot
2009-04-23	Rami Rauch	minor update	commit \| commitdiff \| tree \| snapshot
2009-04-23	Rami Rauch	minor update	commit \| commitdiff \| tree \| snapshot
2009-04-23	Rami Rauch	added parse LibInfo by FlowcellId and count reads....	commit \| commitdiff \| tree \| snapshot
2009-04-23	Tim Reddy Tim	patched to handle new pf file format with generality...	commit \| commitdiff \| tree \| snapshot
2009-03-05	Rami Rauch	minor changes	commit \| commitdiff \| tree \| snapshot
2009-03-05	Rami Rauch	minor changes	commit \| commitdiff \| tree \| snapshot
2009-02-23	Tim Reddy Tim	Small bug fix	commit \| commitdiff \| tree \| snapshot
2009-02-20	Rami Rauch	added grey highlight for bad libraries (by tag text)	commit \| commitdiff \| tree \| snapshot
2009-02-20	Rami Rauch	added grey highlight for bad libraries (by tag text)	commit \| commitdiff \| tree \| snapshot
2009-02-06	Rami Rauch	added unique contraint to Tag.name filed	commit \| commitdiff \| tree \| snapshot
2009-01-30	Rami Rauch	(no commit message)	commit \| commitdiff \| tree \| snapshot
2009-01-30	Rami Rauch	added a flag for data submission status	commit \| commitdiff \| tree \| snapshot
2009-01-16	Rami Rauch	ongoing adjustments according to lab requirements	commit \| commitdiff \| tree \| snapshot
2009-01-16	Rami Rauch	trying to integrate a django admin template with this...	commit \| commitdiff \| tree \| snapshot
2009-01-16	Rami Rauch	(no commit message)	commit \| commitdiff \| tree \| snapshot
2009-01-16	Rami Rauch	adjusted Projects XML schema to add new CALC type	commit \| commitdiff \| tree \| snapshot
2009-01-16	Rami Rauch	added some help text near the text boxes and added...	commit \| commitdiff \| tree \| snapshot
2009-01-16	Rami Rauch	(no commit message)	commit \| commitdiff \| tree \| snapshot
2009-01-16	Rami Rauch	(no commit message)	commit \| commitdiff \| tree \| snapshot
2009-01-16	Rami Rauch	(no commit message)	commit \| commitdiff \| tree \| snapshot
2009-01-16	Rami Rauch	(no commit message)	commit \| commitdiff \| tree \| snapshot
2009-01-16	Rami Rauch	some minot changes	commit \| commitdiff \| tree \| snapshot
2009-01-12	Tim Reddy Tim	Added file to flatten fasta as prep for bioprospector	commit \| commitdiff \| tree \| snapshot
2009-01-05	Tim Reddy Tim	Change over from wiggle files to bedgraph files to...	commit \| commitdiff \| tree \| snapshot
2009-01-04	Tim Reddy Tim	Added new profile program to make a bedgraph file....	commit \| commitdiff \| tree \| snapshot
2009-01-03	Tim Reddy Tim	Added new program to profile reads using bedgraph forma...	commit \| commitdiff \| tree \| snapshot
2008-12-24	Tim Reddy Tim	Initial check in of c++ short read programming library...	commit \| commitdiff \| tree \| snapshot
2008-12-24	Tim Reddy Tim	Bugfixes	commit \| commitdiff \| tree \| snapshot
2008-12-23	Tim Reddy Tim	Working on a bug fix...	commit \| commitdiff \| tree \| snapshot
2008-12-23	Tim Reddy Tim	Added code to identify snps and update the gneome accor...	commit \| commitdiff \| tree \| snapshot
2008-12-16	Tim Reddy Tim	Forgot to add count_reads.pm script	commit \| commitdiff \| tree \| snapshot
2008-12-16	Tim Reddy Tim	Updated read counts to give information about aligment...	commit \| commitdiff \| tree \| snapshot
2008-12-12	Tim Reddy Tim	Small edits to make code nicer.	commit \| commitdiff \| tree \| snapshot
2008-12-12	Tim Reddy Tim	Initial checkin of code to evaluate known snps from...	commit \| commitdiff \| tree \| snapshot
2008-12-12	Tim Reddy Tim	Final installation of methylseq analysis.	commit \| commitdiff \| tree \| snapshot
2008-12-12	Tim Reddy Tim	(no commit message)	commit \| commitdiff \| tree \| snapshot
2008-12-08	Tim Reddy Tim	Added hg18 known genes file from ucsc	commit \| commitdiff \| tree \| snapshot
2008-12-08	Tim Reddy Tim	Bug fixes to bring up methylseq analysis Tasks	commit \| commitdiff \| tree \| snapshot
2008-12-08	Tim Reddy Tim	Added framework for methylseq analysis.	commit \| commitdiff \| tree \| snapshot
2008-12-03	Tim Reddy Tim	Bug-fixes in sequence repository code and projects...	commit \| commitdiff \| tree \| snapshot
2008-12-02	Rami Rauch	added checking on parser Status check: if !='OK' print...	commit \| commitdiff \| tree \| snapshot
2008-12-02	Rami Rauch	added checking on parser Status check: if !='OK' print...	commit \| commitdiff \| tree \| snapshot
2008-12-02	Rami Rauch	added exception catching to the parser and a simple...	commit \| commitdiff \| tree \| snapshot
2008-12-01	Rami Rauch	changed Tasks&Projects Server to illumin-mac.stanford...	commit \| commitdiff \| tree \| snapshot
2008-11-25	Tim Reddy Tim	minor typo.	commit \| commitdiff \| tree \| snapshot
2008-11-25	Tim Reddy Tim	Small change to handle the odd case when no alignment...	commit \| commitdiff \| tree \| snapshot
2008-11-25	Tim Reddy Tim	Minor typeo fix	commit \| commitdiff \| tree \| snapshot
2008-11-25	Tim Reddy Tim	Re-factored the repository to automatically calculate...	commit \| commitdiff \| tree \| snapshot
2008-11-25	Tim Reddy Tim	Major analysis server update. Had to switch to a new...	commit \| commitdiff \| tree \| snapshot
2008-11-25	Tim Reddy Tim	Added script front-end for primer-design code	commit \| commitdiff \| tree \| snapshot
2008-11-25	Tim Reddy Tim	Added qPCR Validation design code	commit \| commitdiff \| tree \| snapshot
2008-11-24	Tim Reddy Tim	Add validation primer code to MACS source	commit \| commitdiff \| tree \| snapshot
2008-11-24	Tim Reddy Tim	Moving QC functionalty into repository so we can run...	commit \| commitdiff \| tree \| snapshot
2008-11-24	Tim Reddy Tim	Removed from hard-coded directories. Starting to bring...	commit \| commitdiff \| tree \| snapshot
2008-11-24	Tim Reddy Tim	Changes the install line to be a copy instead of a...	commit \| commitdiff \| tree \| snapshot
2008-11-19	Rami Rauch	converts the HTSW align format (derived from Eland...	commit \| commitdiff \| tree \| snapshot
2008-11-19	Rami Rauch	added: if peak score < zero put zero	commit \| commitdiff \| tree \| snapshot
2008-11-07	Rami Rauch	Progress Reports Generator	commit \| commitdiff \| tree \| snapshot
2008-11-07	Rami Rauch	(no commit message)	commit \| commitdiff \| tree \| snapshot
2008-10-08	Rami Rauch	Added a LibInfo folder	commit \| commitdiff \| tree \| snapshot
2008-10-08	Rami Rauch	(no commit message)	commit \| commitdiff \| tree \| snapshot
2008-10-08	Rami Rauch	added updLibInfo function	commit \| commitdiff \| tree \| snapshot
2008-10-08	Rami Rauch	added case for calling updLibInfo	commit \| commitdiff \| tree \| snapshot
2008-10-07	Diane Trout	update imports for runfolder and eland_makebed for...	commit \| commitdiff \| tree \| snapshot
2008-10-07	Rami Rauch	Added a display column (not DB) to show the total count...	commit \| commitdiff \| tree \| snapshot
2008-10-07	Diane Trout	I moved more of options in settings.py to the .htsworkf...	commit \| commitdiff \| tree \| snapshot
2008-10-07	Diane Trout	I modified the admin base site login page slightly...	commit \| commitdiff \| tree \| snapshot
2008-09-30	Diane Trout	update imports in srf for htsw directory structure	commit \| commitdiff \| tree \| snapshot
2008-09-30	Diane Trout	Pull tool to make srf files from trunk (depends on	commit \| commitdiff \| tree \| snapshot
2008-09-30	Diane Trout	solexa2srf likes to produce output, so my trick of...	commit \| commitdiff \| tree \| snapshot
2008-09-30	Diane Trout	add setuptools setup.py scripts for the modules I need...	commit \| commitdiff \| tree \| snapshot
2008-09-22	Rami Rauch	converts QuEST peakcalls output file into narrowPeak...	commit \| commitdiff \| tree \| snapshot
2008-09-08	Rami Rauch	Removed all Antibody related fields from the Library...	commit \| commitdiff \| tree \| snapshot
2008-09-04	Rami Rauch	removed affiliation field from the search_fields option	commit \| commitdiff \| tree \| snapshot
2008-09-04	Rami Rauch	(no commit message)	commit \| commitdiff \| tree \| snapshot
2008-09-04	Rami Rauch	(no commit message)	commit \| commitdiff \| tree \| snapshot
2008-09-03	Tim Reddy Tim	Updates to profile reads to be more general in how...	commit \| commitdiff \| tree \| snapshot
2008-08-30	Tim Reddy Tim	Added installation notes	commit \| commitdiff \| tree \| snapshot
2008-08-29	Tim Reddy Tim	Added MACS source	commit \| commitdiff \| tree \| snapshot
2008-08-29	Diane Trout	Change the django settings.py file to get configuration...	commit \| commitdiff \| tree \| snapshot
2008-08-29	Tim Reddy Tim	Minor typos fixes	commit \| commitdiff \| tree \| snapshot
2008-08-29	Diane Trout	Merge in all of my testing code from trunk.	commit \| commitdiff \| tree \| snapshot
2008-08-29	Diane Trout	merge in my changes from trunk	commit \| commitdiff \| tree \| snapshot
2008-08-29	Brandon King	Template loading fix.	commit \| commitdiff \| tree \| snapshot
2008-08-29	Diane Trout	Ignore *.py[co~] files	commit \| commitdiff \| tree \| snapshot
2008-08-29	Diane Trout	return the project xml config file as text/plain so...	commit \| commitdiff \| tree \| snapshot
2008-08-29	Diane Trout	update the url matching to provide proper access to the	commit \| commitdiff \| tree \| snapshot
2008-08-28	Tim Reddy Tim	First complete Projects/Tasks build.	commit \| commitdiff \| tree \| snapshot
next

htsworkflow sequencing LIMS software

RSS Atom