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htsworkflow.git
2014-10-23 Diane Troutmark the example submission rule files as being raw... master commit | commitdiff | tree | snapshot
2014-10-23 Diane Troutmost of our test submission rule files use bz2 regexes... commit | commitdiff | tree | snapshot
2014-10-23 Diane TroutChange unittest2 back into unittest. commit | commitdiff | tree | snapshot
2014-06-10 Diane TroutAdd post_json as some DCC objects are created with... commit | commitdiff | tree | snapshot
2014-06-10 Diane TroutRename headers to json_headers for requests (seemed... commit | commitdiff | tree | snapshot
2014-06-10 Diane TroutUpdates to jsonld context for the DCC schemas. commit | commitdiff | tree | snapshot
2014-06-10 Diane TroutUpdate test_encoded test cases due to https now being... commit | commitdiff | tree | snapshot
2014-06-10 Diane TroutDCC switched to https commit | commitdiff | tree | snapshot
2014-06-10 Diane TroutUpdate fastqname code & test code to better support... commit | commitdiff | tree | snapshot
2014-06-10 Diane TroutDirectly generate compressed fastq files from HiSeq... commit | commitdiff | tree | snapshot
2014-06-10 Diane Troutthe filename templates were moved from condorfastq... commit | commitdiff | tree | snapshot
2014-06-10 Diane TroutIndicate when desplit_fastq didn't get any files to... commit | commitdiff | tree | snapshot
2014-06-10 Diane TroutMake sure we can load a run file that lacks alignment... commit | commitdiff | tree | snapshot
2014-06-10 Diane TroutFor some reason the previous integrety fixes, added... commit | commitdiff | tree | snapshot
2014-06-10 Diane TroutPostgresql has referential integrety checking. commit | commitdiff | tree | snapshot
2014-06-10 Diane TroutIgnore the path when comparing filenames from the md5... commit | commitdiff | tree | snapshot
2014-06-10 Diane Troutuse autoopen to access fastq files commit | commitdiff | tree | snapshot
2014-06-10 Diane TroutStart implementing tool to compute library fastq quality commit | commitdiff | tree | snapshot
2014-06-10 Diane TroutJust use the python 2 url parsers instead of trying... commit | commitdiff | tree | snapshot
2014-06-10 Diane TroutUpdate timestamps in inventory app test data to be... commit | commitdiff | tree | snapshot
2014-06-10 Diane Troutpoint default flowcell directory to test data commit | commitdiff | tree | snapshot
2014-06-10 Diane Troutadd default values for some application specific values commit | commitdiff | tree | snapshot
2014-06-10 Diane TroutConfigure default STATICFILES_DIRS for static files... commit | commitdiff | tree | snapshot
2014-06-10 Diane TroutMathematica had a suggestion for a fastq mime type... commit | commitdiff | tree | snapshot
2014-06-10 Diane TroutRegex pattern was wrong. commit | commitdiff | tree | snapshot
2014-06-10 Diane TroutConvert more timestamps to include timezone commit | commitdiff | tree | snapshot
2014-06-10 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2014-02-18 Diane TroutAdd option to compress fastq file commit | commitdiff | tree | snapshot
2014-02-12 Diane TroutAllow arbitrarily long regexes in experiment.FileType... commit | commitdiff | tree | snapshot
2014-01-22 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2014-01-22 Diane Troutpass filters a string not an undefined variable commit | commitdiff | tree | snapshot
2014-01-17 Diane TroutRemove django test environment setup code. commit | commitdiff | tree | snapshot
2014-01-17 Diane TroutUse SkipIf to skip copier tests if benderjab isn't... commit | commitdiff | tree | snapshot
2014-01-17 Diane TroutConvert timestamps from the runfolder file to a timezon... commit | commitdiff | tree | snapshot
2014-01-17 Diane Troutdjango provides django.utils.timezone.now to return... commit | commitdiff | tree | snapshot
2014-01-17 Diane TroutSet default timezone to where our lab is located commit | commitdiff | tree | snapshot
2014-01-17 Diane TroutUpdate test data dates to have timezone information commit | commitdiff | tree | snapshot
2014-01-17 Diane TroutFix test to use newer django database dictionary instea... commit | commitdiff | tree | snapshot
2014-01-17 Diane TroutRe-add default email addresses for email notification... commit | commitdiff | tree | snapshot
2014-01-17 Diane TroutImplement a encoded search to json-ld wrapper. commit | commitdiff | tree | snapshot
2014-01-17 Diane Troutmake sure @vocab url has a trailing #. Its needed to... commit | commitdiff | tree | snapshot
2014-01-17 Diane TroutUse new context creation functions to attach context... commit | commitdiff | tree | snapshot
2014-01-17 Diane TroutAdd functions to create a json-ld context and add names... commit | commitdiff | tree | snapshot
2014-01-15 Diane TroutUtility class for accessing ENCODE3's submit / data... commit | commitdiff | tree | snapshot
2014-01-15 Diane TroutAdapter to use PyLD's json-ld parser to add triples... commit | commitdiff | tree | snapshot
2014-01-15 Diane Troutremove some trailing whitespace commit | commitdiff | tree | snapshot
2014-01-15 Diane Troutremove some trailing whitespace commit | commitdiff | tree | snapshot
2014-01-15 Diane TroutAdd option to get_model to disable RDF graph context. commit | commitdiff | tree | snapshot
2014-01-08 Diane TroutIgnore kdevelop & kate project files. commit | commitdiff | tree | snapshot
2014-01-08 Diane TroutRename stripNamespace strip_namespace commit | commitdiff | tree | snapshot
2013-12-23 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2013-12-23 Diane Troutupdate settings for new location of WSGI_APPLICATION... commit | commitdiff | tree | snapshot
2013-12-23 Diane Troutfix quote typos with the {% static %} template tag commit | commitdiff | tree | snapshot
2013-12-23 Diane TroutMove wsgi into the actual project root. commit | commitdiff | tree | snapshot
2013-12-17 Diane Troutremove some test code debugging print statements commit | commitdiff | tree | snapshot
2013-12-17 Diane TroutUpdate WSGI_APPLICATION to point to the updated locatio... commit | commitdiff | tree | snapshot
2013-12-17 Diane TroutInventory works, even though its was hidden between... commit | commitdiff | tree | snapshot
2013-12-17 Diane Troutmove an example result directory into git and use it... commit | commitdiff | tree | snapshot
2013-12-17 Diane TroutMerge branch 'django1.4' commit | commitdiff | tree | snapshot
2013-12-17 Diane TroutUpdate requirements to require diango 1.6 commit | commitdiff | tree | snapshot
2013-12-17 Diane TroutStart simplyfing settings by using from settings_local... commit | commitdiff | tree | snapshot
2013-12-17 Diane Troutadd new wsgi.py driver commit | commitdiff | tree | snapshot
2013-12-17 Diane TroutUpdate templates to consistently use {% static %} inste... commit | commitdiff | tree | snapshot
2013-12-17 Diane TroutMove loading DTD into a function as the call caused... commit | commitdiff | tree | snapshot
2013-12-17 Diane Troutmove django imports around, change one function call... commit | commitdiff | tree | snapshot
2013-12-17 Diane TroutUpdate exception caught for newer django? commit | commitdiff | tree | snapshot
2013-12-17 Diane Troutuse url function call for url definition instead of... commit | commitdiff | tree | snapshot
2013-12-17 Diane TroutMove use of settings default into the function instead... commit | commitdiff | tree | snapshot
2013-12-10 Diane TroutUpdate manage script to django 1.6 commit | commitdiff | tree | snapshot
2013-12-10 Diane TroutBeing able to filter on paired end runs might be useful commit | commitdiff | tree | snapshot
2013-12-10 Diane Troutremove deprecated module django.contrib.databrowse commit | commitdiff | tree | snapshot
2013-12-10 Diane TroutWith 1.6 boolean field changed to default Null, so... commit | commitdiff | tree | snapshot
2013-12-10 Diane TroutDjango 1.6 is pickier about enforcing referential integrity commit | commitdiff | tree | snapshot
2013-12-10 Diane TroutFix urls patterns import to be compatible with django 1.6 commit | commitdiff | tree | snapshot
2013-12-10 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... commit | commitdiff | tree | snapshot
2013-12-10 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... commit | commitdiff | tree | snapshot
2013-12-09 Diane TroutAdd new paired library types to our hackish list for... commit | commitdiff | tree | snapshot
2013-12-06 Diane TroutAttempt to be robust to not having an alignment in... commit | commitdiff | tree | snapshot
2013-12-06 Diane TroutAttempt to be robust to not having an alignment in... commit | commitdiff | tree | snapshot
2013-12-06 Diane TroutAfter implementing proper tests get a working implement... commit | commitdiff | tree | snapshot
2013-12-06 Diane TroutAfter implementing proper tests get a working implement... commit | commitdiff | tree | snapshot
2013-12-05 Diane Troutfix typo commit | commitdiff | tree | snapshot
2013-12-05 Diane Troutfix typo commit | commitdiff | tree | snapshot
2013-12-05 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... commit | commitdiff | tree | snapshot
2013-12-05 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... commit | commitdiff | tree | snapshot
2013-12-05 Diane TroutRecent IPAR xml config blocks include the runfolder... commit | commitdiff | tree | snapshot
2013-12-05 Diane TroutUpdate for UCSC's validate manifest 1.7 commit | commitdiff | tree | snapshot
2013-12-05 Diane TroutProvide reporting of what command failed when bigWigInf... commit | commitdiff | tree | snapshot
2013-12-05 Diane TroutRecent IPAR xml config blocks include the runfolder... commit | commitdiff | tree | snapshot
2013-12-05 Diane TroutAdd a way to report what url was failing commit | commitdiff | tree | snapshot
2013-12-02 Diane TroutCatch and report another class of exception commit | commitdiff | tree | snapshot
2013-10-21 Diane TroutMerge remote-tracking branch 'brisby/django1.4' into... commit | commitdiff | tree | snapshot
2013-10-21 Diane TroutPass additional information to the trackhub. commit | commitdiff | tree | snapshot
2013-10-21 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... commit | commitdiff | tree | snapshot
2013-10-17 Diane TroutMerge branch 'master' into django1.4 commit | commitdiff | tree | snapshot
2013-10-17 Diane TroutAdd command line feature to srf command commit | commitdiff | tree | snapshot
2013-10-17 Diane TroutDynamically respond to the number of lanes. commit | commitdiff | tree | snapshot
2013-10-17 Diane TroutFix typo. commit | commitdiff | tree | snapshot
2013-10-17 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... commit | commitdiff | tree | snapshot
2013-10-17 Diane TroutImplement a wrapper around bigWigInfo to report bigWig... commit | commitdiff | tree | snapshot
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