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htsworkflow.git
2012-06-27 Diane TroutAdd script for updating database to data run versions... v0.5.5 commit | commitdiff | tree | snapshot
2012-06-27 Diane TroutIf I'm going to make a call to logger, I really should... commit | commitdiff | tree | snapshot
2012-06-27 Diane TroutOnly allow one default cluster station or sequencer... commit | commitdiff | tree | snapshot
2012-06-27 Diane TroutOnly allow one default cluster station or sequencer... commit | commitdiff | tree | snapshot
2012-06-27 Diane TroutAuto-generate a secret key for django and store in... commit | commitdiff | tree | snapshot
2012-06-26 Diane TroutAdd the ability to specify default cluster station... commit | commitdiff | tree | snapshot
2012-06-26 Diane Troutreformatting to be more pep8 like commit | commitdiff | tree | snapshot
2012-06-25 Diane TroutConvert dictionary comprehension to dict(generator... commit | commitdiff | tree | snapshot
2012-06-25 Diane TroutAdapt select strike-out widget to django 1.2 commit | commitdiff | tree | snapshot
2012-06-23 Diane TroutForgot to add the css file to add 'active' state to... commit | commitdiff | tree | snapshot
2012-06-23 Diane TroutAdd an 'active' state to the sequencers. commit | commitdiff | tree | snapshot
2012-06-22 Diane TroutShow software version information on datarun page commit | commitdiff | tree | snapshot
2012-06-22 Diane TroutSave pipeline version information from run_xml into... commit | commitdiff | tree | snapshot
2012-06-22 Diane TroutAdd links to libraries and submission to data loaded... commit | commitdiff | tree | snapshot
2012-06-21 Diane TroutMerge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor... commit | commitdiff | tree | snapshot
2012-06-15 Diane TroutMove typeof. I think its now getting parsed by rapper... commit | commitdiff | tree | snapshot
2012-06-14 Diane TroutImport information from NCBI SRA into a RDF model. commit | commitdiff | tree | snapshot
2012-06-14 Diane TroutSlightly different sort order for finding libraries commit | commitdiff | tree | snapshot
2012-06-12 Diane TroutAdd a software (name) property to firecrest, ipar,... commit | commitdiff | tree | snapshot
2012-06-11 Diane TroutReturn a gerald version number as a number and not... commit | commitdiff | tree | snapshot
2012-06-07 Diane TroutAdd instrument ID and model to sequencer table commit | commitdiff | tree | snapshot
2012-06-02 Diane TroutSplit lane parameters into seperate classes for GA... commit | commitdiff | tree | snapshot
2012-05-31 Diane TroutFixup docstring to be clearer to others commit | commitdiff | tree | snapshot
2012-05-25 Diane TroutMerge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor... commit | commitdiff | tree | snapshot
2012-05-25 Diane Troutreplace tab charcter with spaces in the multiplex index... live commit | commitdiff | tree | snapshot
2012-05-25 Diane TroutMerge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor... commit | commitdiff | tree | snapshot
2012-05-25 Diane TroutFix Multiplex index pluralization commit | commitdiff | tree | snapshot
2012-05-23 Diane TroutGenerate html reports when doing sparql queries with... commit | commitdiff | tree | snapshot
2012-05-16 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2012-05-16 Diane TroutTweak some test code to work with librdf 1.0.10 commit | commitdiff | tree | snapshot
2012-05-16 Diane Troutupdate summary.py to extract data from HiSeq runs. commit | commitdiff | tree | snapshot
2012-05-15 Diane TroutFix bugs introduduced by the improved HiSeq runfolder... commit | commitdiff | tree | snapshot
2012-05-12 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2012-05-12 Diane TroutI found this version more useful for trying to commit | commitdiff | tree | snapshot
2012-05-12 Diane TroutProperly constructing the geo soft file really needed... commit | commitdiff | tree | snapshot
2012-05-12 Diane TroutPrepare for submitting data to geo by: commit | commitdiff | tree | snapshot
2012-05-10 Diane TroutMinimal changes needed to get raw data archived for... commit | commitdiff | tree | snapshot
2012-05-04 Diane Trout100% test coverage for alphanum.py commit | commitdiff | tree | snapshot
2012-05-03 Diane TroutRename a cell-line since we're now using "treatment... commit | commitdiff | tree | snapshot
2012-04-17 Diane TroutAdd ability to override location to tar and lftp commands commit | commitdiff | tree | snapshot
2012-04-17 Diane TroutRename global logger to LOGGER to be more PEP8 like commit | commitdiff | tree | snapshot
2012-04-16 Diane TroutFix a typo and a missing .items() from the change of... commit | commitdiff | tree | snapshot
2012-04-13 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2012-04-12 Diane TroutExtend the adapter id field to support the dual indexed... commit | commitdiff | tree | snapshot
2012-04-11 Diane TroutStart developing GEO SOFT submission tool. commit | commitdiff | tree | snapshot
2012-04-11 Diane TroutMove code out of ucsc_gather and into the htsworkflow... commit | commitdiff | tree | snapshot
2012-04-02 Diane TroutRemove a dead form commit | commitdiff | tree | snapshot
2012-03-29 Diane TroutChange to using django templates for generating condor... commit | commitdiff | tree | snapshot
2012-03-29 Diane TroutImprove a settings error message, as it was confusing... commit | commitdiff | tree | snapshot
2012-03-27 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2012-03-27 Diane TroutAdd an option to make a mini archive containing just... commit | commitdiff | tree | snapshot
2012-03-26 Diane TroutSwitch to lxml for parsing the summary file. commit | commitdiff | tree | snapshot
2012-03-26 Diane TroutRemove a function from the inifile version of ucsc_gather commit | commitdiff | tree | snapshot
2012-03-23 Diane TroutApparently I forgot to remove a parameter why creating... commit | commitdiff | tree | snapshot
2012-03-23 Diane TroutAdd fastq to the raw format add_xoption commit | commitdiff | tree | snapshot
2012-03-23 Diane TroutAdd a rdf type for ucsc track records commit | commitdiff | tree | snapshot
2012-03-22 Diane TroutMessed up the RDFa for specifying that a library was... commit | commitdiff | tree | snapshot
2012-03-22 Diane TroutUse name instead of library_name as the property descri... commit | commitdiff | tree | snapshot
2012-03-08 Diane TroutActually if I provide an output file, I want to write... commit | commitdiff | tree | snapshot
2012-03-08 Diane TroutChange name of term used for conditions to condition_term commit | commitdiff | tree | snapshot
2012-03-07 Diane TroutUpdate archive script to try and deal with HiSeq multip... commit | commitdiff | tree | snapshot
2012-03-07 Diane TroutAlways include the python path when generating the... commit | commitdiff | tree | snapshot
2012-03-07 Diane TroutForgot to add split attribute to __eq__ test. commit | commitdiff | tree | snapshot
2012-03-07 Diane TroutAdd extract HiSeq project based split fastq files to... commit | commitdiff | tree | snapshot
2012-03-07 Diane TroutUpdate help message since we have a new type of file... commit | commitdiff | tree | snapshot
2012-03-06 Diane TroutSupport scanning for split fastq files generated by... commit | commitdiff | tree | snapshot
2012-03-06 Diane TroutIgnore some more coverage files commit | commitdiff | tree | snapshot
2012-03-06 Diane TroutAdd module to convert multiple fastq files into a singl... commit | commitdiff | tree | snapshot
2012-03-06 Diane TroutAdd ability to print out json structures returned by... commit | commitdiff | tree | snapshot
2012-03-05 Diane TroutUse named tuple for sequence flowcell/start/stop/projec... commit | commitdiff | tree | snapshot
2012-03-02 Diane TroutCore functions for saving and finding fastq files gener... commit | commitdiff | tree | snapshot
2012-03-01 Diane TroutRemove some debug prints commit | commitdiff | tree | snapshot
2012-03-01 Diane TroutSimulate a HiSeq runfolder. commit | commitdiff | tree | snapshot
2012-02-02 Diane TroutMake report prettier. commit | commitdiff | tree | snapshot
2012-01-31 Diane TroutShorten option for specifying model name. commit | commitdiff | tree | snapshot
2012-01-30 Diane TroutFix a typo in some RDF example data commit | commitdiff | tree | snapshot
2012-01-30 Diane TroutMake it possible to filter which genome to run report... commit | commitdiff | tree | snapshot
2012-01-30 Diane TroutAdd ability to refresh library data from our htsw server commit | commitdiff | tree | snapshot
2012-01-25 Diane TroutStart writing a report for "so, what experiments have... commit | commitdiff | tree | snapshot
2012-01-25 Diane TroutAdded scanning for libraries that aren't attached to... commit | commitdiff | tree | snapshot
2012-01-25 Diane Troutsplit a function into two. (A query execute function... commit | commitdiff | tree | snapshot
2012-01-25 Diane TroutChanged pprint daf attributes to a pformat output via... commit | commitdiff | tree | snapshot
2012-01-25 Diane TroutFix 'typo' in a library URN. commit | commitdiff | tree | snapshot
2012-01-23 Diane TroutDon't use assertIn as older ubuntu python doesn't have it commit | commitdiff | tree | snapshot
2012-01-23 Diane TroutInvalid library IDs should 404, not return a useless... commit | commitdiff | tree | snapshot
2011-12-20 Diane TroutHandle dateTime timestamps in RDF.Nodes commit | commitdiff | tree | snapshot
2011-12-20 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2011-12-20 Diane Troutwhitespace reformatting commit | commitdiff | tree | snapshot
2011-12-20 Diane TroutMove ucsc_encode_submission code out of extra so nose... commit | commitdiff | tree | snapshot
2011-12-20 Diane TroutRemove eXecute bit from modules commit | commitdiff | tree | snapshot
2011-12-20 Diane TroutInclude the test data for testing importing ucsc downlo... commit | commitdiff | tree | snapshot
2011-12-20 Diane TroutAdd in test code for testing downloading the ucsc downl... commit | commitdiff | tree | snapshot
2011-12-20 Diane TroutDeleted obsolete tests commit | commitdiff | tree | snapshot
2011-12-20 Diane TroutTry to figure out where UCSC is hosting our submitted... commit | commitdiff | tree | snapshot
2011-11-22 Diane TroutAdd a method to override command used to convert srf... commit | commitdiff | tree | snapshot
2011-11-07 Diane TroutUse Node.uri instead of manually trimming off RDF.Node... commit | commitdiff | tree | snapshot
2011-11-07 Diane TroutFunction generating index text was assuming there'd... commit | commitdiff | tree | snapshot
2011-11-07 Diane TroutUpdate library adapter type initial data to match lorie... commit | commitdiff | tree | snapshot
2011-11-07 Diane TroutMerge in removal of queuecommand sleep. commit | commitdiff | tree | snapshot
2011-11-05 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
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htsworkflow sequencing LIMS software