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htsworkflow.git
2013-10-11 Diane TroutMake it possible to set a label on a track. commit | commitdiff | tree | snapshot
2013-10-09 Diane Troutadd replaces / replace_reason generation to trackhub... commit | commitdiff | tree | snapshot
2013-10-09 Diane Troutremove spurious newline commit | commitdiff | tree | snapshot
2013-10-08 Diane TroutBe more forgiving about the md5sum filename path commit | commitdiff | tree | snapshot
2013-10-08 Diane TroutAdd helpful logging information to explain missing... commit | commitdiff | tree | snapshot
2013-09-24 Diane TroutShare more code to generate result tree. commit | commitdiff | tree | snapshot
2013-08-12 Diane TroutUpdate test data for renamed library type. commit | commitdiff | tree | snapshot
2013-08-10 Diane TroutAdd sortOrder and filtering parameters to the trackhub. commit | commitdiff | tree | snapshot
2013-07-22 Diane TroutMove version finding code into the util directory. commit | commitdiff | tree | snapshot
2013-07-22 Diane TroutTest changes to submission code. commit | commitdiff | tree | snapshot
2013-07-22 Diane TroutGenerate manifest.txt files for submitting to ENCODE3. commit | commitdiff | tree | snapshot
2013-07-22 Diane Troutturtle writing improvements. commit | commitdiff | tree | snapshot
2013-07-22 Diane TroutAdd a generator that returns analysis nodes from a... commit | commitdiff | tree | snapshot
2013-07-20 Diane TroutAdd python namespace for encode3 RDF namespace commit | commitdiff | tree | snapshot
2013-07-18 Diane TroutAdd function to list the names for submissions from... commit | commitdiff | tree | snapshot
2013-07-17 Diane TroutAdd function to parse scp / ssh style URLs. commit | commitdiff | tree | snapshot
2013-07-16 Diane TroutDeleting commented out code. commit | commitdiff | tree | snapshot
2013-07-08 Diane TroutUpdate test to work with species -> species_name rename. commit | commitdiff | tree | snapshot
2013-07-03 Diane TroutGenerate manifest files for ENCODE3 commit | commitdiff | tree | snapshot
2013-07-01 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... commit | commitdiff | tree | snapshot
2013-07-01 Diane TroutAdd the option to copy tree in addition to making a... commit | commitdiff | tree | snapshot
2013-07-01 Diane TroutInitial attempt to start generating trackHubs and manif... commit | commitdiff | tree | snapshot
2013-07-01 Diane Trouttype checking more detailed than Literal doesn't work... commit | commitdiff | tree | snapshot
2013-06-28 Diane TroutAdd option to copy source files for a submission. commit | commitdiff | tree | snapshot
2013-06-18 Diane TroutFurther improve reliability of make_tree_from. commit | commitdiff | tree | snapshot
2013-06-18 Diane Troutcopy_tree_from wasn't actually making any symlinks. commit | commitdiff | tree | snapshot
2013-06-18 Diane TroutUpdate tests for new version of redland rdf lib. commit | commitdiff | tree | snapshot
2013-06-18 Diane TroutRemove deprecated adminmedia template tag from loader. commit | commitdiff | tree | snapshot
2013-06-18 Diane TroutReplace deprecated django.contrib adminmedia with stati... commit | commitdiff | tree | snapshot
2013-06-18 Diane TroutUse proper User model import. commit | commitdiff | tree | snapshot
2013-02-01 Diane TroutPreliminary implementation of trackDb generation. commit | commitdiff | tree | snapshot
2013-02-01 Diane TroutForgot to import an exception I used commit | commitdiff | tree | snapshot
2013-02-01 Diane TroutMake a sample key list to go along with our lane list commit | commitdiff | tree | snapshot
2013-01-16 dianeAdd more entries to genome version detection map. commit | commitdiff | tree | snapshot
2013-01-16 Diane TroutSupport scanning HiSeq runs with multiple analyses. commit | commitdiff | tree | snapshot
2013-01-16 Diane TroutThrown an exception if we can't parse base calling... commit | commitdiff | tree | snapshot
2013-01-15 Diane TroutStart making documentation for htsworkflow. commit | commitdiff | tree | snapshot
2013-01-09 Diane TroutA better resolution to a possible circular dependency. commit | commitdiff | tree | snapshot
2013-01-09 Diane TroutDon't accidentally transform an object into a tuple. commit | commitdiff | tree | snapshot
2013-01-08 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... commit | commitdiff | tree | snapshot
2013-01-08 Diane TroutTry to make Aligned result directories optional in... commit | commitdiff | tree | snapshot
2013-01-08 Diane TroutAdd unaligned stats files to hiseq test case commit | commitdiff | tree | snapshot
2013-01-08 Diane TroutTweak timestamp format. commit | commitdiff | tree | snapshot
2012-12-14 Diane TroutGerald's time-stamp format was inconsistent. commit | commitdiff | tree | snapshot
2012-12-14 Diane TroutMake my ChangeList sub-class compatibile with Django 1.3 commit | commitdiff | tree | snapshot
2012-12-13 Diane TroutMake the inventory pages work with the new HTSChangeList. commit | commitdiff | tree | snapshot
2012-12-13 Diane TroutDjango 1.4 requires the csrf token for posts. commit | commitdiff | tree | snapshot
2012-12-13 Diane TroutUse specific time formatting instead of locale '%c' commit | commitdiff | tree | snapshot
2012-12-13 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkfl... commit | commitdiff | tree | snapshot
2012-12-12 Diane TroutSimplify linking fastq files to their library id. commit | commitdiff | tree | snapshot
2012-12-08 Diane TroutAdd a FastqName class to create and parse standardized... commit | commitdiff | tree | snapshot
2012-11-30 Diane TroutChange my copied version of admin.changelist to a subclass. commit | commitdiff | tree | snapshot
2012-11-30 Diane TroutThe formatting for the model name changed. commit | commitdiff | tree | snapshot
2012-11-29 Diane TroutAdd a few more records for django db initial_data.json. commit | commitdiff | tree | snapshot
2012-11-29 Diane TroutUse unittest2's module hooks for setting up the django... commit | commitdiff | tree | snapshot
2012-11-29 Diane TroutChange csrf imports and database settings for django 1.4 commit | commitdiff | tree | snapshot
2012-11-29 Diane TroutRemove prints that were being called in test code. commit | commitdiff | tree | snapshot
2012-11-28 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2012-11-28 Diane TroutChanged name= to verbose_name= for LibraryType. commit | commitdiff | tree | snapshot
2012-11-28 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2012-11-28 Diane TroutMake extra sure Django's setup test environment is... commit | commitdiff | tree | snapshot
2012-11-28 Diane TroutConvert to unittest2 commit | commitdiff | tree | snapshot
2012-11-28 Diane TroutConvert to unittest2 commit | commitdiff | tree | snapshot
2012-11-27 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2012-11-27 Diane TroutIgnoring the missing type RDF error for the page under... commit | commitdiff | tree | snapshot
2012-11-27 Diane TroutAdd dependencies to the setup.py commit | commitdiff | tree | snapshot
2012-11-20 Diane TroutTest presence of species & species name on library... commit | commitdiff | tree | snapshot
2012-11-20 Diane TroutCorrectly implement merging Notification & Manager... commit | commitdiff | tree | snapshot
2012-11-20 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2012-11-20 Diane TroutRenamed various django tests.py to test_module.py commit | commitdiff | tree | snapshot
2012-11-20 Diane TroutIgnore .tox directory commit | commitdiff | tree | snapshot
2012-11-20 Diane TroutFix RDF schema problems with lane_number and species. commit | commitdiff | tree | snapshot
2012-11-20 Diane TroutRun the library detail page through RDF validation. commit | commitdiff | tree | snapshot
2012-11-20 Diane TroutChange add_default_schema to use pkg_resources feature... commit | commitdiff | tree | snapshot
2012-11-20 Diane TroutAdd dependency information to the setup.py script commit | commitdiff | tree | snapshot
2012-11-20 Diane Troutrdf:Resource can be either a resource or a blank node. commit | commitdiff | tree | snapshot
2012-11-20 Diane TroutUniquely merge BCC and Manager lists for sending notifi... commit | commitdiff | tree | snapshot
2012-11-16 Diane TroutFurther attempts to validate RDF models. commit | commitdiff | tree | snapshot
2012-11-14 Diane TroutAdd error message for typoing a result map filename. commit | commitdiff | tree | snapshot
2012-11-14 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2012-10-11 Diane TroutCatch another lookup error. commit | commitdiff | tree | snapshot
2012-09-27 Diane Troutolder librdf wanted to include type information when... commit | commitdiff | tree | snapshot
2012-09-27 Diane TroutWhen collecting files for a geo submission, group on... commit | commitdiff | tree | snapshot
2012-09-25 Diane TroutThis might actually generate soft file with raw & suppl... commit | commitdiff | tree | snapshot
2012-09-24 Diane TroutMerge changing lane_number to string and sequence findi... commit | commitdiff | tree | snapshot
2012-09-24 Diane TroutAdd a log message to for debugging commit | commitdiff | tree | snapshot
2012-09-24 Diane TroutDefine XHTML_RDF_DTD as None when we can't load the DTD commit | commitdiff | tree | snapshot
2012-09-24 Diane TroutMake the public html pages valid xhtml, and validate... commit | commitdiff | tree | snapshot
2012-09-24 Diane Troutremove some dead commented out code. commit | commitdiff | tree | snapshot
2012-09-20 Diane TroutFix (some) missing closing tags. commit | commitdiff | tree | snapshot
2012-09-20 Diane TroutMake a validation error message between different ages... commit | commitdiff | tree | snapshot
2012-09-20 Diane TroutAlso make the library index page conform to htsworkflow... commit | commitdiff | tree | snapshot
2012-09-20 Diane TroutMinor tweaks to deal with the older version of librdf... commit | commitdiff | tree | snapshot
2012-09-19 Diane TroutUse htsworkflow ontology to validate various RDF using... commit | commitdiff | tree | snapshot
2012-09-19 Diane TroutRefactor property type validator to support multiple... commit | commitdiff | tree | snapshot
2012-09-19 Diane TroutAdd stub xhtml vocab ontology, to make model validation... commit | commitdiff | tree | snapshot
2012-09-18 Diane TroutMerge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor... commit | commitdiff | tree | snapshot
2012-09-18 Diane Troutemail.bcc should be a list, not a nested list. commit | commitdiff | tree | snapshot
2012-09-18 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2012-09-18 Diane TroutImprovements to rdfinfer. commit | commitdiff | tree | snapshot
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htsworkflow sequencing LIMS software