080627_HWI-EAS229_0036_3055HAXX Summary

Summary Information For Experiment 080627_HWI-EAS229_0036_3055HAXX on Machine HWI-EAS229



Chip Summary

MachineHWI-EAS229
Run Folder080627_HWI-EAS229_0036_3055HAXX
Chip IDunknown



Chip Results Summary

Clusters Clusters (PF) Yield (kbases)
80933224 43577803 1133022



Lane Parameter Summary

Lane Sample ID Sample Target Sample Type Length Filter Num Tiles Tiles
1 unknown mm9 ELAND 26 '((CHASTITY>=0.6))' 100 Lane 1
2 unknown mm9 ELAND 26 '((CHASTITY>=0.6))' 100 Lane 2
3 unknown mm9 ELAND 26 '((CHASTITY>=0.6))' 100 Lane 3
4 unknown elegans170 ELAND 26 '((CHASTITY>=0.6))' 100 Lane 4
5 unknown elegans170 ELAND 26 '((CHASTITY>=0.6))' 100 Lane 5
6 unknown elegans170 ELAND 26 '((CHASTITY>=0.6))' 100 Lane 6
7 unknown elegans170 ELAND 26 '((CHASTITY>=0.6))' 100 Lane 7
8 unknown elegans170 ELAND 26 '((CHASTITY>=0.6))' 100 Lane 8



Lane Results Summary

Lane Info Tile Mean +/- SD for Lane
Lane Lane Yield (kbases) Clusters (raw) Clusters (PF) 1st Cycle Int (PF) % intensity after 20 cycles (PF) % PF Clusters % Align (PF) Alignment Score (PF) % Error Rate (PF)
1 158046 96483 +/- 9074 60787 +/- 4240 329 +/- 35 101.88 +/- 6.03 63.21 +/- 3.29 70.33 +/- 0.24 9054.08 +/- 59.16 0.46 +/- 0.18
2 156564 133738 +/- 7938 60217 +/- 1926 444 +/- 39 92.62 +/- 7.58 45.20 +/- 3.31 51.98 +/- 0.74 6692.04 +/- 92.49 0.46 +/- 0.09
3 185818 152142 +/- 10002 71468 +/- 2827 366 +/- 36 91.53 +/- 8.66 47.19 +/- 3.80 82.24 +/- 0.44 10598.68 +/- 64.13 0.41 +/- 0.04
4 34953 15784 +/- 2162 13443 +/- 1728 328 +/- 40 97.53 +/- 9.87 85.29 +/- 1.91 80.02 +/- 0.53 10368.82 +/- 71.08 0.15 +/- 0.05
5 167936 119735 +/- 8465 64590 +/- 2529 417 +/- 37 88.69 +/- 14.79 54.10 +/- 2.59 76.95 +/- 0.32 9936.47 +/- 65.75 0.28 +/- 0.02
6 173463 152177 +/- 8146 66716 +/- 2493 372 +/- 39 87.06 +/- 9.86 43.98 +/- 3.12 78.80 +/- 0.43 10162.28 +/- 49.65 0.38 +/- 0.03
7 149287 84649 +/- 7325 57418 +/- 3617 295 +/- 28 89.40 +/- 8.23 67.97 +/- 1.82 33.38 +/- 0.25 4247.92 +/- 32.37 1.00 +/- 0.03
8 106953 54622 +/- 4812 41136 +/- 3309 284 +/- 37 90.21 +/- 9.10 75.39 +/- 2.27 48.33 +/- 0.29 6169.21 +/- 169.50 0.86 +/- 1.22
Tile mean across chip
Av. 101166 54472 354 92.36 60.29 65.25 8403.69 0.50



Expanded Lane Summary

Lane Info Phasing Info Raw Data (tile mean) Filtered Data (tile mean)
Lane Clusters (tile mean) (raw) % Phasing % Prephasing % Error Rate (raw) Equiv Perfect Clusters (raw) % retained Cycle 2-4 Av Int (PF) Cycle 2-10 Av % Loss (PF) Cycle 10-20 Av % Loss (PF) % Align (PF) % Error Rate (PF) Equiv Perfect Clusters (PF)
1 96483 0.7700 0.3100 1.00 49676 63.21 317 +/- 32 0.13 +/- 0.44 -1.14 +/- 0.34 70.33 0.46 41758
2 133738 0.7700 0.3100 1.22 40467 45.20 415 +/- 33 0.29 +/- 0.40 -0.79 +/- 0.35 51.98 0.46 30615
3 152142 0.7700 0.3100 1.30 78588 47.19 344 +/- 26 0.68 +/- 0.51 -0.77 +/- 0.42 82.24 0.41 57552
4 15784 0.7700 0.3100 0.29 11095 85.29 306 +/- 34 0.20 +/- 0.69 -1.28 +/- 0.66 80.02 0.15 10671
5 119735 0.7700 0.3100 0.85 60335 54.10 380 +/- 32 0.34 +/- 0.49 -1.55 +/- 4.69 76.95 0.28 49015
6 152177 0.7700 0.3100 1.21 70905 43.98 333 +/- 27 0.57 +/- 0.50 -0.91 +/- 0.39 78.80 0.38 51663
7 84649 0.7700 0.3100 1.38 21069 67.97 272 +/- 20 1.15 +/- 0.52 -0.84 +/- 0.58 33.38 1.00 18265
8 54622 0.7700 0.3100 1.17 21335 75.39 262 +/- 31 1.10 +/- 0.59 -1.01 +/- 0.47 48.33 0.86 19104


IVC Plots

IVC.htm



All Intensity Plots

All.htm



Error graphs:

Error.htm

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Lane 1

Lane Tile Clusters (raw) Av 1st Cycle Int (PF) Av % intensity after 20 cycles (PF) % PF Clusters % Align (PF) Av Alignment Score (PF) % Error Rate (PF)
1 0001 114972 326.48 94.39 57.44 70.2 9038.6 0.44
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Lane 2

Lane Tile Clusters (raw) Av 1st Cycle Int (PF) Av % intensity after 20 cycles (PF) % PF Clusters % Align (PF) Av Alignment Score (PF) % Error Rate (PF)
2 0001 147793 448.12 83.68 38.57 53.7 6905.4 0.54
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Lane 3

Lane Tile Clusters (raw) Av 1st Cycle Int (PF) Av % intensity after 20 cycles (PF) % PF Clusters % Align (PF) Av Alignment Score (PF) % Error Rate (PF)
3 0001 167904 374.05 86.91 40.36 81.3 10465.0 0.47
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Lane 4

Lane Tile Clusters (raw) Av 1st Cycle Int (PF) Av % intensity after 20 cycles (PF) % PF Clusters % Align (PF) Av Alignment Score (PF) % Error Rate (PF)
4 0001 20308 276.85 92.87 84.26 80.4 10413.8 0.16
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Lane 5

Lane Tile Clusters (raw) Av 1st Cycle Int (PF) Av % intensity after 20 cycles (PF) % PF Clusters % Align (PF) Av Alignment Score (PF) % Error Rate (PF)
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Lane 6

Lane Tile Clusters (raw) Av 1st Cycle Int (PF) Av % intensity after 20 cycles (PF) % PF Clusters % Align (PF) Av Alignment Score (PF) % Error Rate (PF)
6 0001 166844 348.12 77.59 38.13 79.7 10264.4 0.44
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Lane 7

Lane Tile Clusters (raw) Av 1st Cycle Int (PF) Av % intensity after 20 cycles (PF) % PF Clusters % Align (PF) Av Alignment Score (PF) % Error Rate (PF)
7 0001 98913 269.90 86.66 64.55 33.2 4217.5 1.02
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Lane 8

Lane Tile Clusters (raw) Av 1st Cycle Int (PF) Av % intensity after 20 cycles (PF) % PF Clusters % Align (PF) Av Alignment Score (PF) % Error Rate (PF)
8 0001 64972 243.60 89.40 73.17 48.3 6182.8 0.71
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