Flowcell: D0PMDACXX

Barcode lane statistics

Lane Sample ID Sample Ref Index Description Control Project Yield (Mbases) % PF # Reads % of raw clusters per lane % Perfect Index Reads % One Mismatch Reads (Index) % of >= Q30 Bases (PF) Mean Quality Score (PF)
1 12812 Mus_musculus TAAGGCGA ES 10pg Nxt 701 503 N 12812 1,682 97.13 17,320,100 15.05 100.00 0.00 93.59 36.23
1 12813 Mus_musculus CGTACTAG ES 10pg Nxt 702 504 N 12813 2,340 97.66 23,962,119 20.82 100.00 0.00 93.53 36.16
1 12814 Mus_musculus AGGCAGAA ES 10pg Nxt 703 503 N 12814 1,612 97.48 16,542,272 14.37 100.00 0.00 93.76 36.28
1 12815 Mus_musculus TCCTGAGC ST 1-1 Nxt 704 504 N 12815 1,984 97.52 20,342,058 17.67 100.00 0.00 92.70 35.86
1 12816 Mus_musculus GGACTCCT ES 1-1 Nxt 705 503 N 12816 1,358 96.17 14,116,368 12.27 100.00 0.00 92.44 35.87
1 12817 Mus_musculus TAGGCATG ES 1-2 Nxt 706 504 N 12817 1,820 97.45 18,681,381 16.23 100.00 0.00 93.84 36.31
1 lane1 unknown Undetermined Clusters with unmatched barcodes for lane 1 N Undetermined_indices 272 65.77 4,129,350 3.59 0.00 0.00 89.42 35.01
2 12754 Mus_musculus AGGCAGAA Illumina index_N703_N502_Paired ends_LCMD250_Mm_CastaneusXC57Bl_Purkinje N 12754 1,585 97.00 16,340,810 12.35 100.00 0.00 93.91 36.35
2 12818 Homo_sapiens CGTACTAG Illumina index_N702_N501_Paired ends_GM12878_200_singlecell N 12818 1,593 92.36 17,246,981 13.03 100.00 0.00 87.55 34.39
2 12820 Homo_sapiens TAGGCATG Illumina index_N706_N503_Paired ends_GM12878_208_singlecell N 12820 2,209 96.54 22,878,845 17.29 100.00 0.00 93.75 36.26
2 12821 Homo_sapiens TAAGGCGA Illumina index_N701_N501_Paired ends_GM12878_poolsplit_5_singlecell N 12821 1,935 93.00 20,809,512 15.73 100.00 0.00 88.88 34.63
2 12822 Homo_sapiens TCCTGAGC Illumina index_N704_N503_Paired ends_GM12878_poolsplit_6_singlecell N 12822 2,985 96.49 30,936,670 23.38 100.00 0.00 92.68 35.77
2 lane2 unknown Undetermined Clusters with unmatched barcodes for lane 2 N Undetermined_indices 479 19.87 24,108,302 18.22 0.00 0.00 81.00 32.24
3 12744 Mus_musculus TAAGGCGA Illumina index_N701_N504_Paired ends_LCMD240_Mm_CastaneusXC57Bl_Purkinje N 12744 1,875 96.88 19,349,616 15.49 100.00 0.00 94.05 36.49
3 12749 Mus_musculus TCCTGAGC Illumina index_N704_N502_Paired ends_LCMD245_Mm_CastaneusXC57Bl_Purkinje N 12749 1,732 96.89 17,878,210 14.31 100.00 0.00 93.98 36.43
3 12819 Homo_sapiens GGACTCCT Illumina index_N705_N502_Paired ends_GM12878_205_singlecell N 12819 1,977 96.65 20,460,064 16.38 100.00 0.00 94.19 36.48
3 12823 Homo_sapiens CGTACTAG Illumina index_N702_N502_Paired ends_GM12878_poolsplit_7_singlecell N 12823 1,969 96.67 20,364,123 16.30 100.00 0.00 93.29 36.16
3 12824 Homo_sapiens AGGCAGAA Illumina index_N703_N504_Paired ends_GM12878_poolsplit_8_singlecell N 12824 2,245 96.94 23,159,466 18.54 100.00 0.00 93.36 36.14
3 lane3 unknown Undetermined Clusters with unmatched barcodes for lane 3 N Undetermined_indices 1,912 80.60 23,724,897 18.99 0.00 0.00 82.49 32.94

Sample information

Sample

ID
Recipe Operator Directory
12812 SR_indexing Lorian /mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12812/Sample_12812
12813 SR_indexing Lorian /mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12813/Sample_12813
12814 SR_indexing Lorian /mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12814/Sample_12814
12815 SR_indexing Lorian /mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12815/Sample_12815
12816 SR_indexing Lorian /mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12816/Sample_12816
12817 SR_indexing Lorian /mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12817/Sample_12817
lane1 SR_indexing Lorian /mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Undetermined_indices/Sample_lane1
12754 SR_indexing Lorian /mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12754/Sample_12754
12818 SR_indexing Lorian /mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12818/Sample_12818
12820 SR_indexing Lorian /mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12820/Sample_12820
12821 SR_indexing Lorian /mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12821/Sample_12821
12822 SR_indexing Lorian /mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12822/Sample_12822
lane2 SR_indexing Lorian /mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Undetermined_indices/Sample_lane2
12744 SR_indexing Lorian /mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12744/Sample_12744
12749 SR_indexing Lorian /mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12749/Sample_12749
12819 SR_indexing Lorian /mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12819/Sample_12819
12823 SR_indexing Lorian /mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12823/Sample_12823
12824 SR_indexing Lorian /mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12824/Sample_12824
lane3 SR_indexing Lorian /mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Undetermined_indices/Sample_lane3

CASAVA-1.8.2