Sample Summary Information For Experiment (12564_index6)

Project Summary

Project Name 12564_index6
Machine HWI-ST0787
Run Folder 111221_SN787_0107_AD0CV5ACXX
Flow Cell ID D0CV5ACXX
Platform
Control Software HiSeq Control Software 1.4.8
Primary Analysis RTA 1.12.4.2
Secondary Analysis CASAVA-1.8.1

Project Results Summary

Clusters (Raw) Clusters(PF) Yield (MBases)
658,174 475,618 23

Barcode-Lane summary

Barcode-Lane Sample Barcode Lane Species Analysis Type Length Num Tiles Genome Directory
12564_GCCAAT_L5 12564 GCCAAT 5 Homo_sapiens eland extended 49 48 /mmjggl/nicodemus/data01/genomes/hg18/chromosomes//*.fa

Sample Results Summary : Read 1

Sample Info
Sample Sample Yield (Mbases) Clusters (raw) Clusters (PF) 1st Cycle Int (PF) % intensity after 20 cycles (PF) % PF Clusters % Align (PF) Alignment Score (PF) % Mismatch Rate (PF) % >=Q30 bases (PF) Mean Quality SCore (PF)
12564 23 658,174 475,618 1100 89.39 72.26 76.89 128.73 0.40 88.79 35.13

Sample Results Summary : Read 2

Sample Info
Sample Sample Yield (Mbases) Clusters (raw) Clusters (PF) 1st Cycle Int (PF) % intensity after 20 cycles (PF) % PF Clusters % Align (PF) Alignment Score (PF) % Mismatch Rate (PF) % >=Q30 bases (PF) Mean Quality SCore (PF)
12564 0 0 0 0 0

Expanded Sample Summary : Read 1

Sample Info Phasing Info Raw data Filtered data
Sample Clusters (raw) % Phasing % Prephasing % Mismatch Rate (raw) % PF Clusters Cycle 2-4 Av Int (PF) Cycle 2-10 Av % Loss (PF) Cycle 10-20 Av % Loss (PF) % Align (PF) % Mismatch Rate (PF) % >=Q30 bases (PF) Mean Quality SCore (PF)
12564 658,174 0.19 0.31 0.77 72.26 1083.00 -84.76 0.48 76.89 0.40 88.79 35.13

Expanded Sample Summary : Read 2

Sample Info Phasing Info Raw data Filtered data
Sample Clusters (raw) % Phasing % Prephasing % Mismatch Rate (raw) % PF Clusters Cycle 2-4 Av Int (PF) Cycle 2-10 Av % Loss (PF) Cycle 10-20 Av % Loss (PF) % Align (PF) % Mismatch Rate (PF) % >=Q30 bases (PF) Mean Quality SCore (PF)
12564 0 0 0 0 0 0

IVC Plots

click here

All Intensity Plots

click here

Mismatch Graphs

click here

Mismatch Curves

click here

Additional Paired Statistics

Sample Info Relative Orientation Statistics Insert Size Statistics (for relative orientation R+) Insert Statistics (% of individually uniquely alignable pairs)
Sample F-:
>R2 R1>
F+:
>R1 R2>
R-:
<R2 R1>
R+:
>R1 R2<
Total Median Below-median SD Above-median SD Low thresh. High thresh. Too small Too large Orientation and size OK
12564 0

CASAVA-1.8.1