Sample Summary Information For Experiment (12564_index6)
Project Summary
Project Name | 12564_index6 |
Machine | HWI-ST0787 |
Run Folder | 111221_SN787_0107_AD0CV5ACXX |
Flow Cell ID | D0CV5ACXX |
Platform | |
Control Software | HiSeq Control Software 1.4.8 |
Primary Analysis | RTA 1.12.4.2 |
Secondary Analysis | CASAVA-1.8.1 |
Project Results Summary
Clusters (Raw) | Clusters(PF) | Yield (MBases) |
---|---|---|
658,174 | 475,618 | 23 |
Barcode-Lane summary
Barcode-Lane | Sample | Barcode | Lane | Species | Analysis Type | Length | Num Tiles | Genome Directory |
---|
12564_GCCAAT_L5 | 12564 | GCCAAT | 5 | Homo_sapiens | eland extended | 49 | 48 | /mmjggl/nicodemus/data01/genomes/hg18/chromosomes//*.fa |
Sample Results Summary : Read 1
Sample Info | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Sample | Sample Yield (Mbases) | Clusters (raw) | Clusters (PF) | 1st Cycle Int (PF) | % intensity after 20 cycles (PF) | % PF Clusters | % Align (PF) | Alignment Score (PF) | % Mismatch Rate (PF) | % >=Q30 bases (PF) | Mean Quality SCore (PF) |
12564 | 23 | 658,174 | 475,618 | 1100 | 89.39 | 72.26 | 76.89 | 128.73 | 0.40 | 88.79 | 35.13 |
Sample Results Summary : Read 2
Sample Info | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Sample | Sample Yield (Mbases) | Clusters (raw) | Clusters (PF) | 1st Cycle Int (PF) | % intensity after 20 cycles (PF) | % PF Clusters | % Align (PF) | Alignment Score (PF) | % Mismatch Rate (PF) | % >=Q30 bases (PF) | Mean Quality SCore (PF) |
12564 | 0 | 0 | 0 | 0 | 0 |
Expanded Sample Summary : Read 1
Sample Info | Phasing Info | Raw data | Filtered data | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample | Clusters (raw) | % Phasing | % Prephasing | % Mismatch Rate (raw) | % PF Clusters | Cycle 2-4 Av Int (PF) | Cycle 2-10 Av % Loss (PF) | Cycle 10-20 Av % Loss (PF) | % Align (PF) | % Mismatch Rate (PF) | % >=Q30 bases (PF) | Mean Quality SCore (PF) |
12564 | 658,174 | 0.19 | 0.31 | 0.77 | 72.26 | 1083.00 | -84.76 | 0.48 | 76.89 | 0.40 | 88.79 | 35.13 |
Expanded Sample Summary : Read 2
Sample Info | Phasing Info | Raw data | Filtered data | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample | Clusters (raw) | % Phasing | % Prephasing | % Mismatch Rate (raw) | % PF Clusters | Cycle 2-4 Av Int (PF) | Cycle 2-10 Av % Loss (PF) | Cycle 10-20 Av % Loss (PF) | % Align (PF) | % Mismatch Rate (PF) | % >=Q30 bases (PF) | Mean Quality SCore (PF) |
12564 | 0 | 0 | 0 | 0 | 0 | 0 |
IVC Plots
click hereAll Intensity Plots
click hereMismatch Graphs
click hereMismatch Curves
click hereAdditional Paired Statistics
Sample Info | Relative Orientation Statistics | Insert Size Statistics (for relative orientation R+) | Insert Statistics (% of individually uniquely alignable pairs) | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample | F-: >R2 R1> |
F+: >R1 R2> |
R-: <R2 R1> |
R+: >R1 R2< |
Total | Median | Below-median SD | Above-median SD | Low thresh. | High thresh. | Too small | Too large | Orientation and size OK |
12564 | 0 |
CASAVA-1.8.1