Lane | Sample ID | Sample Ref | Index | Description | Control | Project | Yield (Mbases) | % PF | # Reads | % of raw clusters per lane | % Perfect Index Reads | % One Mismatch Reads (Index) | % of >= Q30 Bases (PF) | Mean Quality Score (PF) |
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1 | 12812 | Mus_musculus | TAAGGCGA | ES 10pg Nxt 701 503 | N | 12812 | 1,682 | 97.13 | 17,320,100 | 15.05 | 100.00 | 0.00 | 93.59 | 36.23 |
1 | 12813 | Mus_musculus | CGTACTAG | ES 10pg Nxt 702 504 | N | 12813 | 2,340 | 97.66 | 23,962,119 | 20.82 | 100.00 | 0.00 | 93.53 | 36.16 |
1 | 12814 | Mus_musculus | AGGCAGAA | ES 10pg Nxt 703 503 | N | 12814 | 1,612 | 97.48 | 16,542,272 | 14.37 | 100.00 | 0.00 | 93.76 | 36.28 |
1 | 12815 | Mus_musculus | TCCTGAGC | ST 1-1 Nxt 704 504 | N | 12815 | 1,984 | 97.52 | 20,342,058 | 17.67 | 100.00 | 0.00 | 92.70 | 35.86 |
1 | 12816 | Mus_musculus | GGACTCCT | ES 1-1 Nxt 705 503 | N | 12816 | 1,358 | 96.17 | 14,116,368 | 12.27 | 100.00 | 0.00 | 92.44 | 35.87 |
1 | 12817 | Mus_musculus | TAGGCATG | ES 1-2 Nxt 706 504 | N | 12817 | 1,820 | 97.45 | 18,681,381 | 16.23 | 100.00 | 0.00 | 93.84 | 36.31 |
1 | lane1 | unknown | Undetermined | Clusters with unmatched barcodes for lane 1 | N | Undetermined_indices | 272 | 65.77 | 4,129,350 | 3.59 | 0.00 | 0.00 | 89.42 | 35.01 |
2 | 12754 | Mus_musculus | AGGCAGAA | Illumina index_N703_N502_Paired ends_LCMD250_Mm_CastaneusXC57Bl_Purkinje | N | 12754 | 1,585 | 97.00 | 16,340,810 | 12.35 | 100.00 | 0.00 | 93.91 | 36.35 |
2 | 12818 | Homo_sapiens | CGTACTAG | Illumina index_N702_N501_Paired ends_GM12878_200_singlecell | N | 12818 | 1,593 | 92.36 | 17,246,981 | 13.03 | 100.00 | 0.00 | 87.55 | 34.39 |
2 | 12820 | Homo_sapiens | TAGGCATG | Illumina index_N706_N503_Paired ends_GM12878_208_singlecell | N | 12820 | 2,209 | 96.54 | 22,878,845 | 17.29 | 100.00 | 0.00 | 93.75 | 36.26 |
2 | 12821 | Homo_sapiens | TAAGGCGA | Illumina index_N701_N501_Paired ends_GM12878_poolsplit_5_singlecell | N | 12821 | 1,935 | 93.00 | 20,809,512 | 15.73 | 100.00 | 0.00 | 88.88 | 34.63 |
2 | 12822 | Homo_sapiens | TCCTGAGC | Illumina index_N704_N503_Paired ends_GM12878_poolsplit_6_singlecell | N | 12822 | 2,985 | 96.49 | 30,936,670 | 23.38 | 100.00 | 0.00 | 92.68 | 35.77 |
2 | lane2 | unknown | Undetermined | Clusters with unmatched barcodes for lane 2 | N | Undetermined_indices | 479 | 19.87 | 24,108,302 | 18.22 | 0.00 | 0.00 | 81.00 | 32.24 |
3 | 12744 | Mus_musculus | TAAGGCGA | Illumina index_N701_N504_Paired ends_LCMD240_Mm_CastaneusXC57Bl_Purkinje | N | 12744 | 1,875 | 96.88 | 19,349,616 | 15.49 | 100.00 | 0.00 | 94.05 | 36.49 |
3 | 12749 | Mus_musculus | TCCTGAGC | Illumina index_N704_N502_Paired ends_LCMD245_Mm_CastaneusXC57Bl_Purkinje | N | 12749 | 1,732 | 96.89 | 17,878,210 | 14.31 | 100.00 | 0.00 | 93.98 | 36.43 |
3 | 12819 | Homo_sapiens | GGACTCCT | Illumina index_N705_N502_Paired ends_GM12878_205_singlecell | N | 12819 | 1,977 | 96.65 | 20,460,064 | 16.38 | 100.00 | 0.00 | 94.19 | 36.48 |
3 | 12823 | Homo_sapiens | CGTACTAG | Illumina index_N702_N502_Paired ends_GM12878_poolsplit_7_singlecell | N | 12823 | 1,969 | 96.67 | 20,364,123 | 16.30 | 100.00 | 0.00 | 93.29 | 36.16 |
3 | 12824 | Homo_sapiens | AGGCAGAA | Illumina index_N703_N504_Paired ends_GM12878_poolsplit_8_singlecell | N | 12824 | 2,245 | 96.94 | 23,159,466 | 18.54 | 100.00 | 0.00 | 93.36 | 36.14 |
3 | lane3 | unknown | Undetermined | Clusters with unmatched barcodes for lane 3 | N | Undetermined_indices | 1,912 | 80.60 | 23,724,897 | 18.99 | 0.00 | 0.00 | 82.49 | 32.94 |
SampleID | Recipe | Operator | Directory |
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12812 | SR_indexing | Lorian | /mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12812/Sample_12812 |
12813 | SR_indexing | Lorian | /mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12813/Sample_12813 |
12814 | SR_indexing | Lorian | /mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12814/Sample_12814 |
12815 | SR_indexing | Lorian | /mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12815/Sample_12815 |
12816 | SR_indexing | Lorian | /mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12816/Sample_12816 |
12817 | SR_indexing | Lorian | /mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12817/Sample_12817 |
lane1 | SR_indexing | Lorian | /mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Undetermined_indices/Sample_lane1 |
12754 | SR_indexing | Lorian | /mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12754/Sample_12754 |
12818 | SR_indexing | Lorian | /mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12818/Sample_12818 |
12820 | SR_indexing | Lorian | /mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12820/Sample_12820 |
12821 | SR_indexing | Lorian | /mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12821/Sample_12821 |
12822 | SR_indexing | Lorian | /mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12822/Sample_12822 |
lane2 | SR_indexing | Lorian | /mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Undetermined_indices/Sample_lane2 |
12744 | SR_indexing | Lorian | /mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12744/Sample_12744 |
12749 | SR_indexing | Lorian | /mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12749/Sample_12749 |
12819 | SR_indexing | Lorian | /mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12819/Sample_12819 |
12823 | SR_indexing | Lorian | /mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12823/Sample_12823 |
12824 | SR_indexing | Lorian | /mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12824/Sample_12824 |
lane3 | SR_indexing | Lorian | /mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Undetermined_indices/Sample_lane3 |
CASAVA-1.8.2