Converted Brandon's scripts into a single python script that doesn't require
-rw-r--r-- 1732 TODO.txt
drwxr-xr-x - docs
drwxr-xr-x - htsworkflow
drwxr-xr-x - scripts
-rw-r--r-- 1089 setup.py
drwxr-xr-x - templates
drwxr-xr-x - test