FIND_PACKAGE(OpenGL )

set(Boost_USE_STATIC_LIBS   OFF)
set(Boost_USE_MULTITHREADED ON)
FIND_PACKAGE(Boost 1.34.1 REQUIRED filesystem unit_test_framework
                                                               serialization system program_options )
FIND_PACKAGE(Boost 1.3.4.1 COMPONENTS python )
FIND_PACKAGE(Qt4)
INCLUDE( ${QT_USE_FILE} )
INCLUDE( Platform )

SET(MOC_HEADERS
            mussa.hpp
            nway_paths.hpp
   )
QT4_WRAP_CPP(MOC_SOURCES ${MOC_HEADERS})

SET(SOURCES alphabet.cpp
            annotations.cpp
            annotation_colors.cpp 
            color.cpp 
            conserved_path.cpp 
            flp.cpp 
            flp_seqcomp.cpp 
            glseqbrowser.cpp 
            glsequence.cpp 
            io.cpp
            mussa.cpp 
            motif_parser.cpp 
            nway_entropy.cpp
            nway_other.cpp 
            nway_paths.cpp
            parse_options.cpp 
            seq.cpp
            seq_span.cpp
            sequence.cpp
            sequence_location.cpp )

GET_MUSSA_COMPILE_FLAGS(ALG_CFLAGS)
GET_MUSSA_LINK_FLAGS(ALG_LDFLAGS)
SET_SOURCE_FILES_PROPERTIES(
  ${SOURCES} ${MOC_SOURCES}
  PROPERTIES
  COMPILE_FLAGS "${ALG_CFLAGS}"
)

ADD_LIBRARY( mussa_core STATIC ${SOURCES} ${MOC_SOURCES})
INCLUDE_DIRECTORIES(${OPENGL_INCLUDE_DIR}
                    ${Boost_INCLUDE_DIR}
                    ${QT_INCLUDES}
                    ${CMAKE_CURRENT_SOURCE_DIR})

SET_TARGET_PROPERTIES(
  mussa_core PROPERTIES
    COMPILE_FLAGS "${ALG_CFLAGS}"
    LINK_FLAGS "${ALG_LDFLAGS}"
)
ADD_SUBDIRECTORY( test )
ADD_SUBDIRECTORY( tsf )