SET(SOURCES annotation_colors.cpp 
            color.cpp 
            conserved_path.cpp 
            flp.cpp 
            flp_seqcomp.cpp 
            glseqbrowser.cpp 
            glsequence.cpp 
            mussa.cpp 
            nway_entropy.cpp
            nway_other.cpp 
            nway_paths.cpp
            parse_options.cpp 
            sequence.cpp)

FIND_PACKAGE(OpenGL)
INCLUDE_DIRECTORIES(${OPENGL_INCLUDE_DIR})
TARGET_LINK_LIBRARIES(mussa_core ${OPEN_gl_LIBRARY})

# these are really only needed for gcc on AMD64
SET_SOURCE_FILES_PROPERTIES(${SOURCES} PROPERTIES COMPILE_FLAGS "-fPIC")
SET_TARGET_PROPERTIES(mussa_core PROPERTIES COMPILE_FLAGS "-fPIC")

ADD_LIBRARY( mussa_core STATIC ${SOURCES} )
ADD_SUBDIRECTORY( test )