CURDIR := $(BASEDIR)alg/

SOURCES.cpp := annotation_colors.cpp \
               color.cpp \
               conserved_path.cpp \
               flp.cpp \
               flp_seqcomp.cpp \
               mussa.cpp \
               nway_paths.cpp \
               nway_entropy.cpp \
               nway_other.cpp \
               sequence.cpp
               # mussa_nway_refine.cpp (broken)

MUSSA_ALG_SRC := $(addprefix $(CURDIR), $(SOURCES.cpp))
MUSSA_ALG_OBJ := $(MUSSA_ALG_SRC:.cpp=$(OBJEXT))

GLSOURCES.cpp := glsequence.cpp  \
                 glseqbrowser.cpp
MUSSA_ALG_GL_SRC := $(addprefix $(CURDIR), $(GLSOURCES.cpp))
MUSSA_ALG_GL_OBJ := $(MUSSA_ALG_GL_SRC:.cpp=$(OBJEXT))

SRC += $(MUSSA_ALG_SRC) $(MUSSA_ALG_GL_SRC)
CXXFLAGS +=