build 015
 - added GPL notification to all modules
 - added LICENSE.txt (the GPL) and beginnings of a README.txt
 - bug fixes
   - fixed motif searching not working on sub-analyses
     (length of sub-analysis sequence not set...)
   - ...that other bug...
   - added code for compile under OS X so analyses dir created in 
same directory as the .mupa file when using "Do Analysis" option

build 014
 - added Annotations window
   - displays all unique annots
     (Only uses the first column of annot ids after start & end indices)
   - allows selecting display colors each annot listed
   - available under View menu
 - added Sequence Copy window
   - enter seq #, start and end indices to display sequence
   - sequence buffer can selected and copied from 
   - available under View menu
 - bug fixes
   - Analysis->Do/Load/Setup/Sub no longer crashes if cancelled/window closed
   - fixed file path issues with loading .mupa or analysis saves
     - mainly problem with OS X, which "runs" from harddrive root directory
       (note, still saves analyses at the root dir...)
     - problem on linux in some cases when switched build 013 save method
       (tho I didn't realize since I could run from any directory)

build 013/build 012
 - finished seqcomp pairwise saving/loading code
 - can now set a higher threshold than initial analysis hard threshold
 - changed save format so all file go in a directory of analysis name


build 011
 - added Sub Analysis window
   - can choose sub regions of the sequences
   - can set new window and threshold settings
   - available under Analysis menu
 - new menu - 'View'
   - moved bar/line toggle here as radio buttons
   - add simple motif search entry as well (can still middle click for it)
 - made sequence view resizable and scale correctly 


build 010
 - added Analysis setup window to interactively create analysis without needing to make a .mupa configuration file
 - added Analysis setup window under file menu
 - Mussa windows now include the name of the analysis in title bar
 - Sequence window clears previous scroll offset when new alignment choosen 


build 009 and earlier
 - occurred before writing was invented...