#
# Used to make sure that we properly report an error when
# an annotation is not a file.
# 


# name of anaylsis directory and stem for associated files
ANA_NAME directory

# if APPEND vars true, a _wXX and/or _tYY added to analysis name
# where XX = WINDOW and YY = THRESHOLD
# Highly recommeded with use of command line override of WINDOW or THRESHOLD
APPEND_WIN true
APPEND_THRES true
  
# first sequence info
SEQUENCE seq/mouse_mck_pro.fa
ANNOTATION mm_mck3test.annot
SEQ_START 300

# the second sequence info
SEQUENCE seq/human_mck_pro.fa
ANNOTATION seq
SEQ_START 300

# analyses parameters: command line args -w -t will override these
WINDOW 30
THRESHOLD 20