# name of anaylsis directory and stem for associated files
ANA_NAME mck3test

# if APPEND vars true, a _wXX and/or _tYY added to analysis name
# where XX = WINDOW and YY = THRESHOLD
# Highly recommeded with use of command line override of WINDOW or THRESHOLD
APPEND_WIN true
APPEND_THRES true
  
# how many sequences are being analyzed
SEQUENCE_NUM 3

# first sequence info
SEQUENCE seq/mouse_mck_pro.fa
ANNOTATION mm_mck3test.annot
SEQ_START 300

# the second sequence info
SEQUENCE seq/human_mck_pro.fa
# ANNOTATION hs_mck3test.annot
SEQ_START 300
# SEQ_END 2400

# third sequence info
SEQUENCE seq/rabbit_mck_pro.fa
# ANNOTATION ra_mck3test.annot

# analyses parameters: command line args -w -t will override these
WINDOW 30
THRESHOLD 20