set(Boost_USE_STATIC_LIBS   OFF)
set(Boost_USE_MULTITHREADED ON)
FIND_PACKAGE(Boost 1.34.1 COMPONENTS python filesystem serialization)
FIND_PACKAGE(OpenGL)
FIND_PACKAGE(PythonLibs)
FIND_PACKAGE(PythonInterp)
# SET(QT_DONT_USE_QTGUI 1)
FIND_PACKAGE(Qt4)
INCLUDE( ${QT_USE_FILE} )


IF(Boost_PYTHON_LIBRARY)
  INCLUDE_DIRECTORIES(${PYTHON_INCLUDE_PATH} ${QT_INCLUDES})
  SET(SOURCES 
        stl_container_adapter.cpp
        alphabet.cpp
        annot.cpp
        annotation_colors.cpp
	annotations.cpp
        conserved_path.cpp 
        drawable.cpp
        flp.cpp
        glsequence.cpp
        module.cpp 
        mussa.cpp
        nway_paths.cpp
        seq_span.cpp
        sequence.cpp
        )
  SET(QUI_SOURCES
    module_qui.cpp
    qt.cpp
    sequence.cpp
    glsequence.cpp
    annotation_colors.cpp
    sequencebrowserwidget.cpp
  )                        
  SET(MUSSA_LIBRARIES
        mussa_core
        ${Boost_PYTHON_LIBRARY}
        ${Boost_SYSTEM_LIBRARY}
        ${Boost_FILESYSTEM_LIBRARY}
        ${Boost_SERIALIZATION_LIBRARY}
        ${OPENGL_gl_LIBRARY}
        ${QT_QTCORE_LIBRARY}
        #optimized ${QT_QTCORE_LIBRARY_RELEASE}
        #debug ${QT_QTCORE_LIBRARY_DEBUG}
     )        
  GET_MUSSA_COMPILE_FLAGS(PY_CFLAGS)
  GET_MUSSA_LINK_FLAGS(PY_LDFLAGS)

	# configure static core python library  
  ADD_LIBRARY(mussa_py STATIC ${SOURCES})
  SET_TARGET_PROPERTIES(mussa_py PROPERTIES 
                        COMPILE_FLAGS "${PY_CFLAGS}"
                        LINK_FLAGS "${PY_LDFLAGS}")

  # configure core (shared) python module 
  ADD_LIBRARY(mussa MODULE ${SOURCES})
  SET_TARGET_PROPERTIES(mussa PROPERTIES 
                        PREFIX ""
                        COMPILE_FLAGS "${PY_CFLAGS}"
                        LINK_FLAGS "${PY_LDFLAGS}")
  TARGET_LINK_LIBRARIES(mussa
                        ${MUSSA_LIBRARIES}
                        ${PYTHON_LIBRARIES}
                        )
  # configure static gui python library
  #ADD_LIBRARY(mussaqui_py STATIC ${QUI_SOURCES})
  #  SET_TARGET_PROPERTIES(mussa_py PROPERTIES 
  #                        COMPILE_FLAGS "${PY_CFLAGS}"
  #                        LINK_FLAGS "${PY_LDFLAGS}")
                        
  # configure gui (shared) python library
  ADD_LIBRARY(mussaqui MODULE ${QUI_SOURCES})
  SET_TARGET_PROPERTIES(mussaqui PROPERTIES 
                       PREFIX ""
                       COMPILE_FLAGS "${PY_CFLAGS}"
                       LINK_FLAGS "${PY_LDFLAGS}")
  TARGET_LINK_LIBRARIES(mussaqui
                        mussa_qui
                        ${MUSSA_LIBRARIES}
                        ${PYTHON_LIBRARIES}
                        ${QT_QTGUI_LIBRARY}
                        ${QT_QTOPENGL_LIBRARY}
                       )
  
  SET_SOURCE_FILES_PROPERTIES(
    ${SOURCES}
    ${QUI_SOURCES}
    PROPERTIES
    COMPILE_FLAGS "${PY_CFLAGS}"
  )
  SET_TARGET_PROPERTIES(
    ${STATIC_PYTHON_TARGETS} ${SHARED_PYTHON_TARGETS}
    PROPERTIES
    COMPILE_FLAGS "${PY_CFLAGS}"
    LINK_FLAGS "${PY_LDFLAGS}"
  )

  IF(PYTHON_EXECUTABLE)
    SET(PYTEST_DIR ${CMAKE_SOURCE_DIR}/py/test/)
    ADD_TEST(TestAnnotations 
                     ${PYTHON_EXECUTABLE} ${PYTEST_DIR}/TestAnnotations.py)
    ADD_TEST(TestSeqSpan ${PYTHON_EXECUTABLE} ${PYTEST_DIR}/TestSeqSpan.py)
    ADD_TEST(TestSequence ${PYTHON_EXECUTABLE} ${PYTEST_DIR}/TestSequence.py)
    ADD_TEST(TestFlp ${PYTHON_EXECUTABLE} ${PYTEST_DIR}/TestFlp.py)
    ADD_TEST(TestMussa ${PYTHON_EXECUTABLE} ${PYTEST_DIR}/TestMussa.py)
  ENDIF(PYTHON_EXECUTABLE)
ELSE(Boost_PYTHON_LIBRARY)
  MESSAGE(STATUS "Not building mussa python extension, Boost python not found")
ENDIF(Boost_PYTHON_LIBRARY)

ADD_SUBDIRECTORY(test)