FIND_PACKAGE(Boost)
FIND_PACKAGE(OpenGL)
FIND_PACKAGE(PythonLibs)
FIND_PACKAGE(PythonInterp)
SET(QT_USE_QTOPENGL 1)
SET(QT_USE_QTASSISTANT 1)
SET(QT_USE_QTNETWORK 1)
FIND_PACKAGE(Qt4)
INCLUDE( ${QT_USE_FILE} )


IF(BOOST_PYTHON_LIBRARY)
  INCLUDE_DIRECTORIES(${PYTHON_INCLUDE_PATH} ${QT_INCLUDES})
  SET(SOURCES 
        annot.cpp
        annotation_colors.cpp
        conserved_path.cpp 
        glsequence.cpp
        module.cpp 
        mussa.cpp
        #MussaWindow.cpp
        nway_paths.cpp
        sequence.cpp
        )
  
  ADD_LIBRARY(mussa MODULE ${SOURCES})
  ADD_LIBRARY(mussa_py STATIC ${SOURCES})
  ADD_CUSTOM_TARGET(mussa.so ALL
                     COMMAND cp libmussa.so mussa.so
                     DEPENDS mussa)
  LINK_DIRECTORIES(${MUSSA_BINARY_DIR}/alg)
  TARGET_LINK_LIBRARIES(mussa 
                          mussa_core
                          mussa_qui
                          ${BOOST_PYTHON_LIBRARY}
                          ${BOOST_FILESYSTEM_LIBRARY}
                          ${OPENGL_gl_LIBRARY}
                          ${PYTHON_LIBRARIES}
                          ${QT_LIBRARIES} 
                        )

  GET_MUSSA_COMPILE_FLAGS(PY_CFLAGS)
  GET_MUSSA_LINK_FLAGS(PY_LDFLAGS)
  SET_SOURCE_FILES_PROPERTIES(
    ${SOURCES}
    PROPERTIES
    COMPILE_FLAGS "${PY_CFLAGS}"
  )
  SET_TARGET_PROPERTIES(
    mussa mussa_py PROPERTIES
    COMPILE_FLAGS "${PY_CFLAGS}"
    LINK_FLAGS "${PY_LDFLAGS}"
  )

  IF(PYTHON_EXECUTABLE)
    SET(PYTHON_TEST_DIR ${CMAKE_SOURCE_DIR}/py/test/)
    ADD_TEST(sequence_py 
             ${PYTHON_EXECUTABLE} ${PYTHON_TEST_DIR}/TestSequence.py)
  ENDIF(PYTHON_EXECUTABLE)
ELSE(BOOST_PYTHON_LIBRARY)
ENDIF(BOOST_PYTHON_LIBRARY)

ADD_SUBDIRECTORY(test)