FIND_PACKAGE(Boost)
FIND_PACKAGE(OpenGL)
FIND_PACKAGE(PythonLibs)
FIND_PACKAGE(PythonInterp)
SET(QT_DONT_USE_QTGUI 1)
FIND_PACKAGE(Qt4)
INCLUDE( ${QT_USE_FILE} )


IF(BOOST_PYTHON_LIBRARY)
  INCLUDE_DIRECTORIES(${PYTHON_INCLUDE_PATH} ${QT_INCLUDES})
  SET(SOURCES 
        annot.cpp
        annotation_colors.cpp
        conserved_path.cpp 
        flp.cpp
        glsequence.cpp
        module.cpp 
        mussa.cpp
        # MussaWindow.cpp
        nway_paths.cpp
        sequence.cpp
        )
  SET(QUI_SOURCES
    module_qui.cpp
    MussaWindow.cpp
  )
  ADD_LIBRARY(mussa MODULE ${SOURCES})
  ADD_LIBRARY(mussa_py STATIC ${SOURCES})
  ADD_LIBRARY(mussa_qui_py STATIC ${QUI_SOURCES})
  # Any suggestions for a more elegant solution to this? -diane
  IF(WIN32)
    ADD_CUSTOM_TARGET(mussa.dll ALL
                      COMMAND copy libmussa.dll mussa.dll
                      DEPENDS mussa)
  ELSE(WIN32)
    # Not win32, aka linux and mac
    ADD_CUSTOM_TARGET(mussa.so ALL
                      COMMAND cp libmussa.so mussa.so
                      DEPENDS mussa)
  ENDIF(WIN32)
  TARGET_LINK_LIBRARIES(mussa 
                          mussa_core
                          ${BOOST_PYTHON_LIBRARY}
                          ${BOOST_FILESYSTEM_LIBRARY}
                          ${BOOST_SERIALIZATION_LIBRARY}
                          ${OPENGL_gl_LIBRARY}
                          ${PYTHON_LIBRARIES}
                          optimized ${QT_QTCORE_LIBRARY} 
                          debug ${QT_QTCORE_LIBRARY_DEBUG} 
                        )
  GET_MUSSA_COMPILE_FLAGS(PY_CFLAGS)
  GET_MUSSA_LINK_FLAGS(PY_LDFLAGS)
  SET_SOURCE_FILES_PROPERTIES(
    ${SOURCES}
    PROPERTIES
    COMPILE_FLAGS "${PY_CFLAGS}"
  )
  SET_TARGET_PROPERTIES(
    mussa mussa_py mussa_qui_py PROPERTIES
    COMPILE_FLAGS "${PY_CFLAGS}"
    LINK_FLAGS "${PY_LDFLAGS}"
  )

  IF(PYTHON_EXECUTABLE)
    SET(PYTEST_DIR ${CMAKE_SOURCE_DIR}/py/test/)
    ADD_TEST(TestSequence ${PYTHON_EXECUTABLE} ${PYTEST_DIR}/TestSequence.py)
    ADD_TEST(TestFlp ${PYTHON_EXECUTABLE} ${PYTEST_DIR}/TestFlp.py)
    ADD_TEST(TestMussa ${PYTHON_EXECUTABLE} ${PYTEST_DIR}/TestMussa.py)
  ENDIF(PYTHON_EXECUTABLE)
ELSE(BOOST_PYTHON_LIBRARY)
ENDIF(BOOST_PYTHON_LIBRARY)

ADD_SUBDIRECTORY(test)