X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=mussa.git;a=blobdiff_plain;f=Doxyfile;h=6cbe2acd830c8c2734fe3d262a3c8e13ca803404;hp=dcb27011a1c6a1e037a3074916bd54928c70e39b;hb=4c1d1e263deea85ab00823282c5ca5fc00fa8c26;hpb=278a0c77dc5e91b866056ab49796e8f7a1fc42c7

diff --git a/Doxyfile b/Doxyfile
index dcb2701..6cbe2ac 100644
--- a/Doxyfile
+++ b/Doxyfile
@@ -450,7 +450,8 @@ WARN_LOGFILE           =
 # directories like "/usr/src/myproject". Separate the files or directories 
 # with spaces.
 
-INPUT                  = gui alg qui .
+INPUT                  = alg qui qui/motif_editor qui/mussa_setup_dialog \
+                         qui/seqbrowser .
 
 # If the value of the INPUT tag contains directories, you can use the 
 # FILE_PATTERNS tag to specify one or more wildcard pattern (like *.cpp 
@@ -547,7 +548,7 @@ FILTER_SOURCE_FILES    = NO
 # Note: To get rid of all source code in the generated output, make sure also 
 # VERBATIM_HEADERS is set to NO.
 
-SOURCE_BROWSER         = NO
+SOURCE_BROWSER         = YES
 
 # Setting the INLINE_SOURCES tag to YES will include the body 
 # of functions and classes directly in the documentation.
@@ -594,7 +595,7 @@ VERBATIM_HEADERS       = YES
 # of all compounds will be generated. Enable this if the project 
 # contains a lot of classes, structs, unions or interfaces.
 
-ALPHABETICAL_INDEX     = NO
+ALPHABETICAL_INDEX     = YES
 
 # If the alphabetical index is enabled (see ALPHABETICAL_INDEX) then 
 # the COLS_IN_ALPHA_INDEX tag can be used to specify the number of columns